LOCUS BC039137 3082 bp mRNA linear ROD 15-JUL-2006 DEFINITION Mus musculus CD4 antigen, mRNA (cDNA clone MGC:18642 IMAGE:3670597), complete cds. ACCESSION BC039137 VERSION BC039137.1 KEYWORDS MGC. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3082) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3082) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Lothar Hennighausen Ph.D., Robin Humphreys cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 23 Row: g Column: 15 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 7304952. FEATURES Location/Qualifiers source 1..3082 /organism="Mus musculus" /mol_type="mRNA" /strain="mix FVB/N, C57BL/6J" /db_xref="taxon:10090" /clone="MGC:18642 IMAGE:3670597" /tissue_type="Mammary tumor. WAP-TGF alpha model. 7 months old, gross tissue." /clone_lib="NCI_CGAP_Mam5" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3082 /gene="Cd4" /gene_synonym="L3T4" /db_xref="GeneID:12504" /db_xref="MGI:MGI:88335" CDS 149..1522 /gene="Cd4" /gene_synonym="L3T4" /codon_start=1 /product="CD4 antigen" /protein_id="AAH39137.1" /db_xref="GeneID:12504" /db_xref="MGI:MGI:88335" /translation="MCRAISLRRLLLLLLQLSQLLAVTQGKTLVLGKEGESAELPCES SQKKITVFTWKFSDQRKILGQHGKGVLIRGGSPSQFDRFDSKKGAWEKGSFPLIINKL KMEDSQTYICELENRKEEVELWVFKVTFSPGTSLLQGQSLTLTLDSNSKVSNPLTECK HKKGKVVSGSKVLSMSNLRVQDSDFWNCTVTLDQKKNWFGMTLSVLGFQSTAITAYKS EGESAEFSFPLNFAEENGWGELMWKAEKDSFFQPWISFSIKNKEVSVQKSTKDLKLQL KETLPLTLKIPQVSLQFAGSGNLTLTLDKGTLHQEVNLVVMKVAQLNNTLTCEVMGPT SPKMRLTLKQENQEARVSEEQKVVQVVAPETGLWQCLLSEGDKVKMDSRIQVLSRGVN QTVFLACVLGGSFGFLGFLGLCILCCVRCRHQQRQAARMSQIKRLLSEKKTCQCPHRM QKSHNLI" BASE COUNT 786 a 840 c 762 g 694 t ORIGIN 1 gaaggcaaag caagactctc ttcttcacta ggtacctgtt tgcaaagtct cgagccctca 61 tatacacaca cctgtgcaag aagcagagtg aaggaaggac tggccagagg ctcagattcc 121 caaccaacaa gagctcaagg agaccaccat gtgccgagcc atctctctta ggcgcttgct 181 gctgctgctg ctgcagctgt cacaactcct agctgtcact caagggaaga cgctggtgct 241 ggggaaggaa ggggaatcag cagaactgcc ctgcgagagt tcccagaaga agatcacagt 301 cttcacctgg aagttctctg accagaggaa gattctgggg cagcatggca aaggtgtatt 361 aattagagga ggttcgcctt cgcagtttga tcgttttgat tccaaaaaag gggcatggga 421 gaaaggatcg tttcctctca tcatcaataa acttaagatg gaagactctc agacttatat 481 ctgtgagctg gagaacagga aagaggaggt ggagttgtgg gtgttcaaag tgaccttcag 541 tccgggtacc agcctgttgc aagggcagag cctgaccctg accttggata gcaactctaa 601 ggtctctaac cccttgacag agtgcaaaca caaaaagggt aaagttgtca gtggttccaa 661 agttctctcc atgtccaacc taagggttca ggacagcgac ttctggaact gcaccgtgac 721 cctggaccag aaaaagaact ggttcggcat gacactctca gtgctgggtt ttcagagcac 781 agctatcacg gcctataaga gtgagggaga gtcagcggag ttctccttcc cactcaactt 841 tgcagaggaa aacgggtggg gagagctgat gtggaaggca gagaaggatt ctttcttcca 901 gccctggatc tccttctcca taaagaacaa agaggtgtcc gtacaaaagt ccaccaaaga 961 cctcaagctc cagctgaagg aaacgctccc actcaccctc aagatacccc aggtctcgct 1021 tcagtttgct ggttctggca acctgactct gactctggac aaagggacac tgcatcagga 1081 agtgaacctg gtggtgatga aagtggctca gctcaacaat actttgacct gtgaggtgat 1141 gggacctacc tctcccaaga tgagactgac cctgaagcag gagaaccagg aggccagggt 1201 ctctgaggag cagaaagtag ttcaagtggt ggcccctgag acagggctgt ggcagtgtct 1261 actgagtgaa ggtgataagg tcaagatgga ctccaggatc caggttttat ccagaggggt 1321 gaaccagaca gtgttcctgg cttgcgtgct gggtggctcc ttcggctttc tgggtttcct 1381 tgggctctgc atcctctgct gtgtcaggtg ccggcaccaa cagcgccagg cagcacgaat 1441 gtctcagatc aagaggctcc tcagtgagaa gaagacctgc cagtgccccc accggatgca 1501 gaagagccat aatctcatct gaggcctagg ccccacctgc agcccaccac ctgcgtcctg 1561 tctcatcgcc cgaggcctgg ggaccagatg aatgtagcag acacgctgcc tccggccttc 1621 tgctctcctc ttccacaacc ggccacggtt tccctccctc tgttcccaag cctgtctgtc 1681 tgcagagctt gccctctgcg tttcagacac tcaagcacac cccatcagct tatttattct 1741 tcgctgctgc ctttctgcca gagcctcggc ccttctcgga ctaaggtcct ggaacctttt 1801 tccagctgtc tgcttggatc aaagggcagt gtatagcacc tggcacggat ggtgggactg 1861 gtgtctggaa atacacagca cagtttacga gagggctctg ggaccaagct gagtggggca 1921 gggagggccg ggaggttgtg catgtcacac atgaagcatg tcaggggcaa atgaagactg 1981 agaggctgcg ggagtcagcc tcagcttccc atgatgcctg cttctctttt gaatttgcaa 2041 gaccagactc acattctaac cagtgcacca acacacatcc aagccacaca cctgtccata 2101 tatccaaaca gcatatctta attcataagc cactttaatg tcccaggcat tcgaccctta 2161 caaaaacctt acaagtggat gagcggtaaa aagcctcatg aactgagtgg aaggagagga 2221 ttaactcttg aaagttgtcc cctatgtatg taccatgacc ctcatgtgta cacaacacac 2281 acacacacac acacacatac acacacgaac acacgcatgt tgcacacatg catgcacgct 2341 gaaatcctac aagctgacag tgatgactaa gatggcagag ataaccagtc atccctagtg 2401 aaatggaact tggttgaatg actacccaag gttacccagc taacaagtgc tgatgtcagg 2461 gccaacccag ggctcctgat ccctagagcc aagccactac atggaacaca gggatgaata 2521 ccacacagat ctctggagct agttccaggc cctcggtata cacacacaca cacacacaca 2581 cacacactgg agcgcagccc ctggcagaga tcttgagagg atggaggagc cattctggtt 2641 tcaaatccct ccttgatcac tgctgttctc acccccccct ccttccccca aaaccctagt 2701 tctcttagag tgaggctggg agagatgcac agagacctgc cgcagtgtgt gcagagcctg 2761 ggaagtggac catgctgggg tcctttatgg agagagcatt gtggcaggtg gctgtgcctt 2821 ccatccagga ggtcaggggt ctaagggctc tccctgagag tcttgatctg tttctcatag 2881 atccacagcc tcctctgcct ctgtcgtttg cctgcttcag cacttccttc cccttttttc 2941 ctcttttctt cccagctggc ctcttctaga aacatccctt ccccacttct cttcattatt 3001 cacttcttat ttttgcccac tccccactcc tgcttcctga gctgacagaa aaataaaggc 3061 tataaataaa aaaaaaaaaa aa //