LOCUS BC039134 1960 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens ligatin, mRNA (cDNA clone MGC:16958 IMAGE:4339127),
complete cds.
ACCESSION BC039134
VERSION BC039134.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1960)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1960)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: p Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56699484.
FEATURES Location/Qualifiers
source 1..1960
/db_xref="H-InvDB:HIT000095537"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:16958 IMAGE:4339127"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1960
/gene="LGTN"
/gene_synonym="HCA56"
/db_xref="GeneID:1939"
/db_xref="HGNC:HGNC:6583"
/db_xref="MIM:151625"
CDS 61..1815
/gene="LGTN"
/gene_synonym="HCA56"
/codon_start=1
/product="ligatin"
/protein_id="AAH39134.2"
/db_xref="GeneID:1939"
/db_xref="HGNC:HGNC:6583"
/db_xref="MIM:151625"
/translation="MFAKAFRVKSNTAIKGSDRRKLRADVTTAFPTLGTDQVSELVPG
KEELNIVKLYAHKGDAVTVYVSGGNPILFELEKNLYPTVYTLWSYPDLLPTFTTWPLV
LEKLVGGADLMLPGLVMPPAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSG
LKGRGFSVLHTYQDHLWRSGNKSSPPSIAPLALDSADLSEEKGSVQMDSTLQGDMRHM
TLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQEQMDELLQQCFLHAL
KCRVKKADLPLLTSTFLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKE
LSKGVESIVAVDWKHPRITSFVIPEPSPTSQTIQEGSREQPYHPPDIKPLYCVPASMT
LLFQESGHKKGSFLEGSEVRTIVINYAKKNDLVDADNKNLVRLDPILCDCILEKNEQH
TVMKLPWDSLLTRCLEKLQPAYQVTLPGQEPIVKKGRICPIDITLAQRASNKKVTVVR
NLEAYGLDPYSVAAILQQRCQASTTVNPAPGAKDSLQVQIQGNQVHHLGWLLLEEYQL
PRKHIQGLEKALKPGKKK"
BASE COUNT 530 a 513 c 486 g 431 t
ORIGIN
1 cctcgctttc ttgacattcc ctggcttctg tgctctcttc cccaggccac cccagcagac
61 atgtttgcca aggcctttcg ggtcaagtcc aacacggcca tcaaggggtc ggacaggaga
121 aagcttcgag ctgatgtgac aactgctttc cccacccttg gaactgatca agtctctgag
181 ttagtacctg gaaaggagga gctcaacatt gtgaagttgt atgctcacaa aggggatgca
241 gtgactgtgt acgtgagtgg tggtaacccc atcctctttg aactggagaa aaatctgtat
301 ccaacagtgt acacgctgtg gtcctatcct gatcttctgc caacctttac aacatggcct
361 ctggtgctcg agaaactggt agggggagca gatttgatgc tgcctggact ggtgatgccc
421 cctgctggtc tgcctcaggt acagaagggc gacctctgtg ccatttcttt ggtggggaac
481 agagcccctg tagccattgg agttgcagcc atgtccacag ctgagatgct cacgtcaggc
541 ctgaagggaa ggggcttctc tgtgctccac acttaccagg accacttgtg gcggtctgga
601 aacaagtcct ctccaccttc cattgctcca ctggccctgg attcagcaga tctcagtgaa
661 gagaaggggt ctgtccagat ggactccacc ctgcagggag acatgaggca catgaccctg
721 gagggggaag aggagaatgg ggaggttcac caggcacgtg aagacaagtc tctctcagaa
781 gccccagaag acaccagcac caggggcctg aaccaagact ccacagatag caaaacgctt
841 caagaacaaa tggatgagct gttacagcaa tgcttcttac atgccttgaa gtgccgagtc
901 aaaaaggctg acctcccttt actcaccagc actttccttg gcagccacat gttctcctgc
961 tgccccgaag gacgacaact ggacataaag aagtcaagct acaaaaagct ctctaagttc
1021 ctgcagcaaa tgcagcagga gcagattata caggtgaagg agctgagcaa aggggtggag
1081 agcattgtgg ctgtggactg gaaacacccg aggattacat ctttcgtcat acccgagccc
1141 tccccgacct cccagactat ccaggagggt agcagggaac agccctatca ccctccagat
1201 ataaaacccc tctactgtgt cccagccagc atgaccctgc tcttccagga gtctggccac
1261 aagaagggga gctttctgga gggcagtgag gtccgaacga tcgtcattaa ctacgccaag
1321 aaaaatgacc tggttgatgc agacaacaaa aatcttgtga gattggatcc catcctatgt
1381 gactgcatct tagagaaaaa tgaacagcat acagtcatga agcttccatg ggacagtctt
1441 ctgaccaggt gtttggaaaa attacagcct gcctatcaag tgacccttcc cggacaagag
1501 cccattgtga agaaagggag aatctgtcca attgacatca ccctagcaca aagagcgtct
1561 aataaaaagg tgaccgtggt ccggaacttg gaggcctatg gtctggaccc atactcagtg
1621 gctgccatcc ttcagcagcg atgccaggct agcaccaccg tcaatcctgc ccctggggcc
1681 aaggacagcc ttcaggtgca gatccaggga aaccaggtcc accacctcgg ctggctattg
1741 cttgaagagt atcagctccc tcgaaaacac atccaaggtc tagaaaaggc cctcaaacct
1801 ggcaagaaga agtgacagac tcttttgtct cacgtggtgg atccggtgga aatccaagct
1861 ctgggctggt aatttttatg agcattttca gcttttgcaa atacaaaata taattcttta
1921 caaaaataaa tttttattct aatctaaaaa aaaaaaaaaa
//