LOCUS BC039016 2150 bp mRNA linear HUM 07-OCT-2003
DEFINITION Homo sapiens neuronal PAS domain protein 1, mRNA (cDNA clone
MGC:47758 IMAGE:5770371), complete cds.
ACCESSION BC039016
VERSION BC039016.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2150)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2150)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 82 Row: l Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22027481.
FEATURES Location/Qualifiers
source 1..2150
/db_xref="H-InvDB:HIT000052118"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:47758 IMAGE:5770371"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2150
/gene="NPAS1"
/gene_synonym="MOP5"
/db_xref="GeneID:4861"
/db_xref="MIM:603346"
CDS 197..1969
/gene="NPAS1"
/gene_synonym="MOP5"
/codon_start=1
/product="NPAS1 protein"
/protein_id="AAH39016.1"
/db_xref="GeneID:4861"
/db_xref="MIM:603346"
/translation="MAAPYPGSGGGSEVKCVGGRGASVPWDFLPGLMVKAPSGPCLQA
QRKEKSRNAARSRRGKENLEFFELAKLLPLPGAISSQLDKASIVRLSVTYLRLRRFAA
LGAPPWGLRAAGPPAGLAPGRRGPAALVSEVFEQHLGGHILQSLDGFVFALNQEGKFL
YISETVSIYLGLSQVEMTGSSVFDYIHPGDHSEVLEQLGLRTPTPGPPTPPSVSSSSS
SSSSLADTPEIEASLTKVPPSSLVQERSFFVRMKSTLTKRGLHVKASGYKVIHVTGRL
RAHALGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELV
GRSCYQFVHGQDATRIRQSHVDLLDKGQVMTGYYRWLQRAGGFVWLQSVATVAGSGKS
PGEHHVLWVSHVLSQAEGGQTPLDAFQLPASVACEEASSPGPEPTEPEPPTEGKQAAP
AENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATPRPEFTSVIRAGVLKQDPV
RPWGLAPPGDPPPTLLHAGFLPPVVRGLCTPGTIRYGPAELGLVYPHLQRLGPGPALP
EAFYPPLGLPYPGPAGTRLPRKGD"
misc_feature 353..484
/gene="NPAS1"
/gene_synonym="MOP5"
/note="HLH; Region: helix loop helix domain"
/db_xref="CDD:smart00353"
misc_feature 617..790
/gene="NPAS1"
/gene_synonym="MOP5"
/note="PAS; Region: PAS domain"
/db_xref="CDD:smart00091"
misc_feature 1103..1273
/gene="NPAS1"
/gene_synonym="MOP5"
/note="PAS; Region: PAS domain"
/db_xref="CDD:smart00091"
BASE COUNT 376 a 764 c 688 g 322 t
ORIGIN
1 tgggcgccga gagctgggcg ccacagcccg cgcgtcccgc tgcgccccgc gcgccccggg
61 gtctatggag ctgcccctcc gcgccgcccg gccggcccca cgccgcgccc ggagcctgct
121 ctgcggccaa gtaatcggac tggcggtcct gcgggagact cggggctcgg agcccgcctg
181 agcgagcccc ccggagatgg cggcccccta tcccggcagt ggcggcggaa gcgaggtcaa
241 atgcgtggga ggccgcggcg ccagcgtccc ctgggacttt ctacccgggc tgatggtcaa
301 ggcgccgtcc ggaccgtgcc tgcaggcgca gcgcaaggag aagtcccgga acgcggcgcg
361 ctcgcggcgc gggaaggaga acctggagtt cttcgagctg gccaagcttc tcccgctgcc
421 cggcgccatc tccagccagc tggacaaggc ttccatcgtg cgcctcagcg tcacctacct
481 ccgcctgcgc cggttcgccg ctctgggggc gccgccctgg gggctgagag ccgcggggcc
541 gccagctggc ctcgccccag gccgccgcgg ccccgcagcg ctggtctccg aagtcttcga
601 gcagcacctg ggaggtcaca tcttgcagtc cctggatggc tttgtgttcg ccttgaacca
661 ggaaggaaaa ttcctctaca tctcagagac agtctccatc tatctgggtc tctcacaggt
721 ggagatgacg ggcagcagcg tcttcgacta cattcaccct ggggaccact cagaggtgct
781 ggagcaactg gggctgcgga cgccgacgcc cggcccccca accccgccct ccgtctcctc
841 ttcctcctcc tcttcctctt cgcttgcaga tacccccgag atcgaggcca gcctcaccaa
901 ggtgcccccc tcctccctgg tccaggagcg ctccttcttt gtccgcatga aatccacgct
961 caccaagagg gggctgcacg tcaaggcctc agggtacaag gtcatccacg tgactgggcg
1021 ccttcgggcc cacgccctgg gccttgtggc cctcgggcac acgttgcccc cggcccccct
1081 ggctgagctg ccactccatg gacacatgat cgtcttccgt ctcagcctgg gtctcaccat
1141 ccttgcttgt gagagcagag tcagcgacca catggacctg gggccctcag agctggtggg
1201 ccgcagctgc taccagtttg tccacggaca ggacgccacg aggatccgcc agagccacgt
1261 ggacttgctg gacaagggtc aggtgatgac tggttactac cgttggctgc agcgtgccgg
1321 gggcttcgtg tggctgcagt ctgtggccac agtggctggg agcgggaaga gccccgggga
1381 gcaccatgtg ctttgggtca gccacgtgct cagccaagcc gagggtggcc aaactccttt
1441 ggatgccttc cagcttccag ccagcgtggc ctgtgaggag gcatccagcc cggggccaga
1501 gcccacagag ccggagcctc cgacggaagg gaagcaggct gccccagcgg agaacgaggc
1561 cccccagacc cagggcaaac gcatcaaagt ggagcccggc ccgagggaaa ccaaaggctc
1621 cgaggacagt ggcgacgagg atccctccag ccacccggcc acaccgaggc ccgagttcac
1681 ctctgtcatc cgggcagggg tcctgaagca ggatccggtg cggccatggg gcctggcgcc
1741 tcccggggac cccccgccca ccctcctgca cgcgggcttc ctgccgccgg tggtgcgggg
1801 cctgtgcaca cccggcacca tccgctacgg ccccgcggag ctgggcctgg tgtacccgca
1861 cctgcagagg ctgggtccgg gccccgcgct cccggaggcc ttttacccgc ccctgggcct
1921 gccctacccg gggcccgcgg gcaccaggct gccgcggaag ggggactgag gactggcaga
1981 gctgccggcg ccggaccctg cgacaaccgg ggtcccccag gacagtaggc ccggctctgc
2041 ccgtagccct gagaattaaa cgccggctct ccctgcagtg gtttgggctc cggaaaaaaa
2101 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
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