LOCUS BC038983 1850 bp mRNA linear HUM 23-JUL-2007
DEFINITION Homo sapiens ubiquitin specific peptidase 36, mRNA (cDNA clone
IMAGE:5756922), complete cds.
ACCESSION BC038983
VERSION BC038983.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1850)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1850)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 82 Row: k Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 35250685
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1850
/db_xref="H-InvDB:HIT000052105"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5756922"
/tissue_type="Blood, adult leukocytes"
/clone_lib="NIH_MGC_118"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1850
/gene="USP36"
/gene_synonym="DUB1"
/db_xref="GeneID:57602"
/db_xref="HGNC:HGNC:20062"
CDS 311..1168
/gene="USP36"
/gene_synonym="DUB1"
/codon_start=1
/product="USP36 protein"
/protein_id="AAH38983.1"
/db_xref="GeneID:57602"
/db_xref="HGNC:HGNC:20062"
/translation="MPIVDKLKEALKPGRKDSADDGELGKLLASSAKKVLLQKIEFEP
ASKSFSYQLEALKSKYVLLNPKTEGASRHKSGDDPPARRQGSEHTYESCGDGVPAPQK
VLFPTERLSLRWERVFRVGAGLHNLGNTCFLNATIQCLTYTPPLANYLLSKEHARSCH
QGSFCMLCVMQNHIVQAFANSGNAIKPVSFIRDLKKIARHFRFGNQEDAHEFLRYTID
AMQKACLNGCAKCVLPHPPSQGFGHLFYMVAAEHSYGNSQPGTFLPRLPLGRRGRICL
WVLKLLEPK"
BASE COUNT 476 a 466 c 496 g 412 t
ORIGIN
1 ctgggtgcgg cgcctttaag cgtcgcggtg acacgtgtgt gaggcgccgg aggcccggat
61 ggtgcgcgtg ctgggccgcg ggccgaagga gtcgccaggg ctgcgtaggc ttgtggcgcg
121 cccgcggaga ggccggggct ctgacgcccg ctctgcggct tcggtgtttg aacaggccac
181 agtccaggag cgcttacatt caggagctcc gcgtagcacc tgcccaacca aactcagccc
241 tccgttaaga tcctggttcc atgccgcagt aggacagcag gcccaagtct gcacatccca
301 gtgatgcacc atgccaatag tggataagtt gaaggaggcc ctgaaacccg gccgcaagga
361 ctcggctgat gatggagaac tggggaagct tcttgcctcc tctgccaaga aggtcctttt
421 acagaaaatc gagttcgagc cagccagcaa gagcttctcc taccagctgg aggccttaaa
481 gagcaaatat gtgttgctca accccaaaac agagggagct agtcgccaca agagtggaga
541 tgacccaccg gccaggagac agggcagtga gcacacgtat gagagctgtg gtgacggagt
601 cccagccccg cagaaagtgc ttttccccac ggagcgactg tctctgaggt gggagcgggt
661 cttccgcgtg ggcgcaggac tccacaacct tggcaacacc tgctttctca atgccaccat
721 ccagtgcttg acctacacac cacctctagc caactacctg ctctccaagg agcatgctcg
781 cagctgccac cagggaagct tctgcatgct gtgtgtcatg cagaaccaca ttgtccaggc
841 cttcgccaac agcggcaacg ccatcaagcc cgtctccttc atccgagacc tgaaaaagat
901 cgcccgacac ttccgctttg ggaaccagga ggacgcgcat gagttcctgc ggtacaccat
961 cgacgccatg cagaaagcct gcctgaatgg ctgtgccaag tgcgtgcttc cccacccacc
1021 ctcccagggc tttggacacc ttttctacat ggtggcagca gaacattcct atggcaacag
1081 ccagcccggc acctttctac ccaggctgcc cttgggtaga cgtggcagaa tttgcctctg
1141 ggtactcaaa ctgttggagc ccaaataggg gattgccctt gcttcctggg aaagggctgt
1201 ctccggagac gtcctgctgg tccggggcgg cttggtagga tcgggtggct gtggtggcgg
1261 cagctgtgtc tgagcagctc agtcaggggg aaatatgtta gcagaccttc ttaggggcat
1321 tcagttctta ccatggactt tttcagtctc ttaaaaatca tgtcgttttt gaaaagaggt
1381 tggggtggta ggaatgaggt ctctgcagta taatttatat gtacatgtat atgtacaaac
1441 agggagcttt aacatgagga ggtttataac tttaggatct gactgtgcct ggctgctgtt
1501 tcttattcac acgccacgta agcccttata tgtgatggtt gccatcacaa attgtctttg
1561 tgtcattcct gagttcatag gttcagacca aagaaaacag gcaggaaatg cttaggactt
1621 ccttgtattg cctcagctta ggatcgtaga aatactttaa atagtttagg gaatatacct
1681 agaatgttct ttagagaagt tgagttgtgg caataagtga ttgaaatggc aaaactactg
1741 gcctcagtgg atgatattct tacgtaaata aagaattttt taatgaaaaa aaaaaaaaaa
1801 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
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