LOCUS BC038971 1517 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens family with sequence similarity 49, member A, mRNA
(cDNA clone MGC:47569 IMAGE:5200807), complete cds.
ACCESSION BC038971
VERSION BC038971.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1517)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1517)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 82 Row: e Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13540579.
FEATURES Location/Qualifiers
source 1..1517
/db_xref="H-InvDB:HIT000052099"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:47569 IMAGE:5200807"
/tissue_type="Brain, adult, 6 pooled whole brains"
/clone_lib="NIH_MGC_114"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1517
/gene="FAM49A"
/gene_synonym="DKFZP566A1524"
/gene_synonym="FLJ11080"
/db_xref="GeneID:81553"
/db_xref="HGNC:HGNC:25373"
CDS 205..1176
/gene="FAM49A"
/gene_synonym="DKFZP566A1524"
/gene_synonym="FLJ11080"
/codon_start=1
/product="family with sequence similarity 49, member A"
/protein_id="AAH38971.1"
/db_xref="GeneID:81553"
/db_xref="HGNC:HGNC:25373"
/translation="MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQD
SESILADLQAYKGAGPEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKA
LQSLLESLTCPPYTPTQHLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRR
TISRNRINNMHLDIENEVNNEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIEN
TTDCLSTMTSVCKVMLETPEYRSRFTSEETLMFCMRVMVGVIILYDHVHPVGAFCKTS
KIDMKGCIKVLKEQAPDSVEGLLNALRFTTKHLNDESTSKQIRAMLQ"
BASE COUNT 487 a 342 c 330 g 358 t
ORIGIN
1 cggcggagcg ggcggcagag cagggcggcg gcgactcgca gggtaccacc atcttaagga
61 cagaaaagct acaggactct aggaggccac cgtcctgatt tgggaagtcc aacttacttt
121 ggccagacag cagctaagct ggttcatccc atcagcctgg attggtgaaa ctgaatcaca
181 ggagatattt ccaggtttgc tgggatggga aacctgctca aagtccttac cagggaaatt
241 gaaaactatc cacacttttt cctggatttt gaaaatgctc agcctacaga aggagagaga
301 gaaatctgga accagatcag cgccgtcctt caggattctg agagcatcct tgcagacctg
361 caggcttaca aaggcgcagg cccagagatc cgagatgcaa ttcaaaatcc caatgacatt
421 cagcttcaag aaaaagcttg gaatgcggtg tgccctcttg ttgtgaggct aaagagattt
481 tacgagtttt ccattagact agaaaaagct cttcagagtt tattggaatc tctgacttgt
541 ccaccctaca caccaaccca acacctggaa agggaacagg ccctggcaaa ggagtttgcc
601 gaaattttac attttaccct tcgattcgat gagctgaaga tgaggaaccc ggctattcag
661 aatgacttca gctactacag aagaacaatc agtcgcaacc gcatcaacaa catgcaccta
721 gacattgaga atgaagtcaa taatgagatg gccaatcgaa tgtccctctt ctatgcagaa
781 gccacgccaa tgctgaaaac ccttagcaat gccacaatgc actttgtctc tgaaaacaaa
841 actctgccaa tagagaacac cacagactgc ctcagcacaa tgacaagtgt ctgtaaagtc
901 atgctggaaa ctccggagta cagaagtagg tttacgagtg aagagaccct gatgttctgc
961 atgagggtga tggtgggagt catcatcctc tatgaccatg tccaccctgt gggagctttc
1021 tgcaagacat ccaagatcga tatgaaaggc tgcataaaag ttttgaagga gcaggcccca
1081 gacagtgtgg aggggctgct aaatgccctc aggttcacta caaagcactt gaacgatgaa
1141 tcaacttcca aacagattcg agcaatgctt cagtagagct ctgctcaaag aagaggatct
1201 atgtgctgac ctcagaagat gtatatgttt acataattta atacagattg atgttaatac
1261 ttgtgtattt acataaccgt ttccttcttg tcactgaaat atatggacct taatttgtat
1321 cctgactgac tcaacccagc agagcataaa ttgacttgag agccttacct ttgatgtctg
1381 aaatgaaacc cccttctcca aaggcaaaat tcggagactt tgatctttgc tactggagtc
1441 ctttaacaac acctataacg ataaaaaatt cctaattgtt aaaaaaaaaa aaaaaaaaaa
1501 aaaaaaaaaa aaaaaaa
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