LOCUS BC038830 958 bp mRNA linear HUM 30-JAN-2008 DEFINITION Homo sapiens SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae), mRNA (cDNA clone MGC:47686 IMAGE:3900806), complete cds. ACCESSION BC038830 VERSION BC038830.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 958) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 958) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (25-OCT-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 82 Row: a Column: 9 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 21361379. FEATURES Location/Qualifiers source 1..958 /db_xref="H-InvDB:HIT000052074" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:47686 IMAGE:3900806" /tissue_type="Pancreas, epithelioid carcinoma" /clone_lib="NIH_MGC_70" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..958 /gene="SNF8" /gene_synonym="Dot3" /gene_synonym="EAP30" /gene_synonym="VPS22" /db_xref="GeneID:11267" /db_xref="HGNC:HGNC:17028" /db_xref="MIM:610904" CDS 83..856 /gene="SNF8" /gene_synonym="Dot3" /gene_synonym="EAP30" /gene_synonym="VPS22" /codon_start=1 /product="SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)" /protein_id="AAH38830.1" /db_xref="GeneID:11267" /db_xref="HGNC:HGNC:17028" /db_xref="MIM:610904" /translation="MHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFK TNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGV QIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGI IPVGGTYLIQSVPAELNMDHTVVLQLAENGYVTVSEIKASLKWETERARQVLEHLLKE GLAWLDLQAPGEAHYWLPALFTDLYSQEITAEEAREALP" BASE COUNT 245 a 231 c 308 g 174 t ORIGIN 1 ccacgcgtcc gccggcggcg gagtccggga cgtggagacc cggggtcccg gcagccgggc 61 ggcccgcggg cccagggtgg ggatgcaccg ccgcggggtg ggagctggcg ccatcgccaa 121 gaagaaactt gcagaggcca agtataagga gcgagggacg gtcttggctg aggaccagct 181 agcccagatg tcaaagcagt tggacatgtt caagaccaac ctggaggaat ttgccagcaa 241 acacaagcag gagatccgga agaatcctga gttccgtgtg cagttccagg acatgtgtgc 301 aaccattggc gtggatccgc tggcctctgg aaaaggattt tggtctgaga tgctgggcgt 361 gggggacttc tattacgaac taggtgtcca aattatcgaa gtgtgcctgg cgctgaagca 421 tcggaatgga ggtctgataa ctttggagga actacatcaa caggtgttga agggaagggg 481 caagttcgcc caggatgtca gtcaagatga cctgatcaga gccatcaaga aactaaaggc 541 acttggcact ggcttcggca tcatccctgt gggcggcact tacctcattc agtctgttcc 601 agctgagctc aatatggatc acaccgtggt gctgcagctg gcagagaatg gctacgtgac 661 tgtcagtgag atcaaagcca gtcttaaatg ggagaccgag cgagcgcggc aagtgctgga 721 acacctgctg aaggaagggt tggcgtggct ggacttacag gccccagggg aggcccacta 781 ctggctgcca gctctcttca ctgacctcta ctcccaggag attacagctg aggaggccag 841 agaagccctc ccctgactgc atgtggaagg gcacacagca gcaggcaggg aggaggcgga 901 ggtggcaaat aaacctgggc aattttgttt atacaaaaaa tagaaaaaaa aaaaaaaa //