LOCUS BC038799 2773 bp mRNA linear HUM 06-JAN-2004 DEFINITION Homo sapiens protocadherin 21, mRNA (cDNA clone MGC:46603 IMAGE:5492127), complete cds. ACCESSION BC038799 VERSION BC038799.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2773) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2773) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (25-OCT-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 78 Row: m Column: 13 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 16933564. FEATURES Location/Qualifiers source 1..2773 /db_xref="H-InvDB:HIT000052069" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:46603 IMAGE:5492127" /tissue_type="Eye, retinoblastoma" /clone_lib="NIH_MGC_67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2773 /gene="PCDH21" /gene_synonym="DKFZp434A132" /gene_synonym="KIAA1775" /db_xref="GeneID:92211" CDS 117..2354 /gene="PCDH21" /gene_synonym="DKFZp434A132" /gene_synonym="KIAA1775" /codon_start=1 /product="PCDH21 protein" /protein_id="AAH38799.1" /db_xref="GeneID:92211" /translation="MRRCRWAALALGLLRLCLAQANFAPHFFDNGVGSTNGNMALFSL PEDTPVGSHVYTLNGTDPEGDPISYHISFDPSTRSVFSVDPTFGNITLVEELDRERED EIEAIISISDGLNLVAEKVVILVTDANDEAPRFIQEPYVALVPEDIPAGSIIFKVHAV DRDTGSGGSVTYFLQNLHSPFAVDRHSGVLRLQAGATLDYERSRTHYITVVAKDGGGR LHGADVVFSATTTVTVNVEDVQDMAPVFVGTPYYGYVYEDTLPGSEVLKVVAMDGDRG KPNRILYSLVNGNDGAFEINETSGAISITQSPAQLQREVYELHVQVTEMSPAGSPAAQ ATVPVTIRIVDLNNHPPTFYGESGPQNRFELSMNEHPPQGEILRGLKITVNDSDQGAN AKFNLQLVGPRGIFRVVPQTVLNEAQVTIIVENSAAIDFEKSKVLTFKLLAVEVNTPE KFSSTADVVIQLLDTNDNVPKFDSLYYVARIPENAPGGSSVVAVTAVDPDTGPWGEVK YSTYGTGADLFLIHPSTGLIYTQPWASLDAEATARYNFYVKAEDMEGKYSVAEVFITL LDVNDHPPQFGKSVQKKTMVLGTPVKIEAIDEDAEEPNNLVDYSITHAEPANVFDINS HTGEIWLKNSIRSLDALHNITPGRDCLWSLEVQAKDRGSPSFSTTALLKIDITDAEVR RLRYMKNSNFPGTTKSVRKPKFKPKKPHSSQGLFLHPHCEIALFNLSNVNLYSRVFQG AAQAS" misc_feature 531..1151 /gene="PCDH21" /gene_synonym="DKFZp434A132" /gene_synonym="KIAA1775" /note="CA; Region: Cadherin repeat domain" /db_xref="CDD:cd00031" BASE COUNT 717 a 800 c 684 g 572 t ORIGIN 1 ccacgcgtcc ggctaccccc attgtggtct ctgccctccc cgcgggccca gggcatgctc 61 cgtgcccctg cgcccggtct cggcggcggc aggcgacact ccgcgccggc ggagacatga 121 ggcgctgccg gtgggccgcc ctggccctgg ggctgctgcg cctctgcttg gctcaggcca 181 acttcgcccc gcacttcttc gacaacgggg tcggcagcac caacggaaac atggctctgt 241 tcagcctccc agaggacacc cctgtaggct ctcacgtata caccctgaat gggacagacc 301 ctgagggaga ccccatctcc taccacatca gctttgaccc cagcactaga agcgtctttt 361 ctgttgaccc cacttttgga aacatcaccc tggttgaaga gctggacaga gagagggaag 421 atgagattga agccatcatc agcatttctg atggcctgaa tctggtggcc gaaaaagtcg 481 tgatcctggt gaccgatgcc aatgatgagg cgcccaggtt catccaggag ccttatgttg 541 ccctggttcc cgaggacata cctgctggga gcatcatctt taaggtccat gcagtggaca 601 gggacacagg ctctggaggg agtgtcacct acttcctgca gaacctgcac tccccatttg 661 ccgtggaccg ccacagcggt gtgctgcgcc tccaggctgg ggccactctg gactacgaga 721 ggtcccggac ccactacatc accgtggtcg ccaaggatgg cggtgggagg cttcatgggg 781 ctgatgtggt gttctcagcc accaccacgg tcacggtcaa tgtggaggat gttcaggaca 841 tggcccctgt cttcgtgggc acaccctact atggctatgt gtacgaggac acccttccgg 901 gctcggaggt actgaaggtg gtcgccatgg atggagaccg gggcaaaccc aatcgaattc 961 tctacagcct tgtaaatggg aacgatggag cctttgaaat taatgagaca tctggagcca 1021 tctccatcac tcagagcccg gcccagctcc agagagaggt gtatgagctg catgtacagg 1081 tgactgaaat gagccctgcg gggagcccag ctgcccaggc caccgtccca gtcaccatca 1141 ggattgtgga cctcaacaac cacccgccaa cattctatgg agagagcgga ccccaaaaca 1201 ggtttgagct gtccatgaat gagcacccac cccagggaga gatcctgcgg ggcctcaaga 1261 tcaccgtcaa tgactccgac cagggagcca atgccaaatt caacttgcag ctggtgggac 1321 ccaggggcat cttccgagtg gttccacaga cagtcctgaa tgaagcccaa gtcacaatca 1381 ttgtggagaa ctcagctgcc attgactttg aaaagtccaa agtattaacc ttcaagctcc 1441 tggctgttga agtgaacacc ccagagaagt tcagttccac agcggatgtt gtgatccagc 1501 tcctggacac caatgacaat gtccccaagt tcgactccct ctactacgtt gccaggattc 1561 ctgagaacgc cccagggggc tccagcgtgg tggctgtcac agctgtggat ccagatacag 1621 gaccctgggg cgaagtgaaa tattccacct atgggactgg ggcagacctc ttcctgatcc 1681 acccatccac tgggcttatc tacacccagc cctgggctag cctggacgct gaggccactg 1741 ccaggtacaa cttctatgtg aaggcagagg acatggaagg caagtacagc gtagctgagg 1801 tgtttatcac actgctggat gtcaatgacc acccccctca gtttggaaag agcgttcaga 1861 agaagacgat ggtgctaggg accccagtga aaattgaggc catagacgag gatgcagagg 1921 aacccaacaa cctggtggac tattccatca cccatgcaga gcccgccaac gtgttcgaca 1981 tcaattccca cacgggggag atctggctca agaattccat ccgctccctg gatgccctgc 2041 acaacatcac acctggaagg gactgcctat ggtccctaga ggtgcaggcc aaggaccggg 2101 gctccccatc cttcagcacc acagccttac tcaagattga catcacagat gctgaggtga 2161 gaagactaag gtacatgaaa aatagtaact tccctggtac aacaaagtca gtaagaaaac 2221 caaaatttaa gcccaagaaa ccacattcca gccagggtct gttcttgcat ccccactgcg 2281 aaattgcctt attcaatctg agtaatgtga atctgtactc tagagttttt caaggggcag 2341 cccaagcatc ttaaaaagta tcagattctc agaaatcctc cctagaccat tttccctctc 2401 cctaaatttc tatgtttaca gaagcaactg aatacttccc tacccaccaa catgctcctg 2461 gctctcccct gcactgcttg ctgctcttcc acagcccttc tctcatcctg acccctctgt 2521 ctcatgtgca ccaccaagct tcttttgctt ggcttgaagg tctgaacatc cactctcacc 2581 ttcatggtag cccaggctat ttcatgatgg tgacaccctc aagatccgta gaccactgta 2641 ttagttcgtt ctcatgctgc taataaagat acccgagact gggtaattta tagaggaaaa 2701 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2761 aaaaaaaaaa aaa //