LOCUS BC038440 1866 bp mRNA linear HUM 27-OCT-2006
DEFINITION Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide
N-acetylgalactosaminyltransferase 1 (GalNAc-T1), mRNA (cDNA clone
MGC:39891 IMAGE:4478643), complete cds.
ACCESSION BC038440
VERSION BC038440.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1866)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1866)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-OCT-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 62 Row: b Column: 7.
FEATURES Location/Qualifiers
source 1..1866
/db_xref="H-InvDB:HIT000095216"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39891 IMAGE:4478643"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1866
/gene="GALNT1"
/gene_synonym="GALNAC-T1"
/db_xref="GeneID:2589"
/db_xref="HGNC:HGNC:4123"
/db_xref="MIM:602273"
CDS 340..1839
/gene="GALNT1"
/gene_synonym="GALNAC-T1"
/codon_start=1
/product="GALNT1 protein"
/protein_id="AAH38440.1"
/db_xref="GeneID:2589"
/db_xref="HGNC:HGNC:4123"
/db_xref="MIM:602273"
/translation="MGKPVVIPKEDQEKMKEMFKINQFNLMASEMIALNRSLPDVRLE
GCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDF
LKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSKGQVITFLDAHCECTVGWLE
PLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRR
KGDRTLPVRTPTMAGGLFSIDIDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEI
VTCSHVGHVFRKATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPGVTKVDYG
DISSRVGLRHKLQCKPFSWYLENIYPDSQIPRHYFSLGEIRNVETNQCLDNMARKENE
KVGIFNCHGMGGNQVFSYTANKEIRTDDLCLDVSKLNGPVTMLKCHHLKGNQLWEYDP
VKLTLQHVNSNQCLDKATEEDSQVPSIRDCNGSRSQQWLLRNVTLPEIF"
BASE COUNT 585 a 354 c 454 g 473 t
ORIGIN
1 ccacgcgtcc ggcgagcggc ctgcggggcg cccctgcggc ccgggcccgc cgcgcggagc
61 tgccgccgcg cgcctagcga ggtgccatga gaaaatttgc atactgcaag gtggtcctag
121 ccacctcctt gatttgggta ctcttggata tgttcctgct gctttacttc agtgaatgca
181 acaaatgtga tgaaaaaaag gagagaggac ttcctgctgg agatgcgcag gtaaattgaa
241 catgaaattg gaaattgaca aggatgttga agtagcagaa agttaccagt gagttaagtt
301 ctagagccag tacaaaagcc tcatgaaggt cctggagaaa tggggaaacc agtcgtcatt
361 cctaaagagg atcaagaaaa gatgaaagag atgtttaaaa tcaatcagtt caatttaatg
421 gcaagtgaga tgattgcact caacagatct ttaccagatg ttaggttaga agggtgtaaa
481 acaaaggtgt atccagataa tcttcctaca acaagtgtgg tgattgtttt ccacaatgag
541 gcttggagca cacttctgcg aactgtccat agtgtcatta atcgctcacc aagacacatg
601 atagaagaaa ttgttctagt agatgatgcc agtgaaagag actttttgaa aaggccttta
661 gagagttatg tgaaaaaact aaaagtacca gttcatgtaa ttcgaatgga acaacgttct
721 ggattgatca gagctagatt aaaaggagct gctgtgtcta aaggccaagt gatcaccttc
781 ctggatgccc attgtgagtg tacagtggga tggctggagc ctctcttggc caggatcaaa
841 catgacagga gaacagtggt gtgtcccatc atcgatgtga tcagtgatga tacttttgag
901 tacatggcag gctctgatat gacctatggt gggttcaact ggaagctcaa ttttcgctgg
961 tatcctgttc cccaaagaga aatggacaga aggaaaggtg atcggactct tcctgtcagg
1021 acacctacca tggcaggagg ccttttttca atagacatag attactttca ggaaattgga
1081 acatatgatg ctggaatgga tatttgggga ggagaaaacc tagaaatttc ctttaggatt
1141 tggcagtgtg gaggaacttt ggaaattgtt acatgctcac atgttggaca tgtgtttcgg
1201 aaagctacac cttacacgtt tccaggaggc acagggcaga ttatcaataa aaataacaga
1261 cgacttgcag aagtgtggat ggatgaattc aagaatttct tctatataat ttctccaggt
1321 gttacaaagg tagattatgg agatatatcg tcaagagttg gtctaagaca caaactacaa
1381 tgcaaacctt tttcctggta cctagagaat atatatcctg attctcaaat tccacgtcac
1441 tatttctcat tgggagagat acgaaatgtg gaaacgaatc agtgtctaga taacatggct
1501 agaaaagaga atgaaaaagt tggaattttt aattgccatg gtatgggggg taatcaggtt
1561 ttctcttata ctgccaacaa agaaattaga acagatgacc tttgcttgga tgtttccaaa
1621 cttaatggcc cagttacaat gctcaaatgc caccacctaa aaggcaacca actctgggag
1681 tatgacccag tgaaattaac cctgcagcat gtgaacagta atcagtgcct ggataaagcc
1741 acagaagagg atagccaggt gcccagcatt agagactgca atggaagtcg gtcccagcag
1801 tggcttcttc gaaacgtcac cctgccagaa atattctgag accaaattta caaaaaaaaa
1861 aaaaaa
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