LOCUS BC038405 2170 bp mRNA linear HUM 26-JUN-2007 DEFINITION Homo sapiens mucin-like protocadherin, mRNA (cDNA clone MGC:34114 IMAGE:5185584), complete cds. ACCESSION BC038405 VERSION BC038405.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2170) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2170) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-OCT-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 50 Row: f Column: 16 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 13929444. FEATURES Location/Qualifiers source 1..2170 /db_xref="H-InvDB:HIT000095193" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:34114 IMAGE:5185584" /tissue_type="Colon, Kidney, Stomach, adult, whole pooled" /clone_lib="NIH_MGC_116" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2170 /gene="MUPCDH" /gene_synonym="MU-PCDH" /db_xref="GeneID:53841" /db_xref="HGNC:HGNC:7521" /db_xref="MIM:606839" CDS 23..1978 /gene="MUPCDH" /gene_synonym="MU-PCDH" /codon_start=1 /product="mucin-like protocadherin" /protein_id="AAH38405.1" /db_xref="GeneID:53841" /db_xref="HGNC:HGNC:7521" /db_xref="MIM:606839" /translation="MGSWALLWPPLLFTGLLVRPPGTMAQAQYCSVNKDIFEVEENTN VTEPLVDIHVPEGQEVTLGALSTPFAFRIQGNQLFLNVTPDYEEKSLLEAQLLCQSGG TLVTQLRVFVSVLDVNDNAPEFPFKTKEIRVEEDTKVNSTVIPETQLQAEDRDKDDIL FYTLQEMTAGASDYFSLVSVNRPALRLDRPLDFYERPNMTFWLLVRDTPGENVEPSHT ATATLVLNVVPADLRPPWFLPCTFSDGYVCIQAQYHGAVPTGHILPSPLVLRPGPIYA EDGDRGINQPIIYSIFRGNVNGTFIIHPDSGNLTVARSVPSPMTFLLLVKGQQADLAR YSVTQVTVEAVAAAGSPPRFPQRLYRGTVARGAGAGVVVKDAAAPSQPLRIQAQDPEF SDLNSAITYRITNHSHFRMEGEVVLTTTTLAQAGAFYAEVEAHNTVTSGTATTVIEIQ VSEQEPPSTGGGPSEDKRFSVVDMAALGGVLGALLLLALLGLAVLVHKHYGPRLKCCS GKAPEPQPQGFDNQAFLPDHKANWAPVPSPTHDPKPAEAPMPAEPAPPGPASPGGAPE PPAAARAGGSPTAVRSILTKERRPEGGYKAVWFGEDIGTEADVVVLNAPTLDVDGASD SGSGDEGEGAGRGGGPYDAPGGDDSYI" BASE COUNT 490 a 708 c 620 g 352 t ORIGIN 1 ctgccaggtg acagccgcca agatggggtc ttgggccctg ctgtggcctc ccctgctgtt 61 caccgggctg ctcgtccgac ccccggggac catggcccag gcccagtact gctctgtgaa 121 caaggacatc tttgaagtag aggagaacac aaatgtcacc gagccgctgg tggacatcca 181 cgtcccggag ggccaggagg tgaccctcgg agccttgtcc accccctttg catttcggat 241 ccagggaaac cagctgtttc tcaacgtgac tcctgattac gaggagaagt cactgcttga 301 ggctcagctg ctgtgtcaga gcggaggcac attggtgacc cagctaaggg tgttcgtgtc 361 agtgctggac gtcaatgaca atgcccccga attccccttt aagaccaagg agataagggt 421 ggaggaggac acgaaagtga actccaccgt catccccgag acgcaactgc aggctgagga 481 ccgcgacaag gacgacattc tgttctacac cctccaggaa atgacagcag gtgccagtga 541 ctacttctcc ctggtgagtg taaaccgtcc cgccctgagg ctggaccggc ccctggactt 601 ctacgagcgg ccgaacatga ccttctggct gctggtgcgg gacactccgg gggagaatgt 661 ggaacccagc cacactgcca ccgccacact agtgctgaac gtggtgcccg ccgacctgcg 721 gcccccgtgg ttcctgccct gcaccttctc agatggctac gtctgcattc aagctcagta 781 ccacggggct gtccccacgg ggcacatact gccatctccc ctcgtcctgc gtcccggacc 841 catctacgct gaggacggag accgcggcat caaccagccc atcatctaca gcatctttag 901 gggaaacgtg aatggtacat tcatcatcca cccagactcg ggcaacctca ccgtggccag 961 gagtgtcccc agccccatga ccttccttct gctggtgaag ggccaacagg ccgaccttgc 1021 ccgctactca gtgacccagg tcaccgtgga ggctgtggct gcggccggga gcccgccccg 1081 cttcccccag agactgtatc gtggcaccgt ggcgcgtggc gctggagcgg gcgttgtggt 1141 caaggatgca gctgcccctt ctcagcctct gaggatccag gctcaggacc cggagttctc 1201 ggacctcaac tcggccatca catatcgaat taccaaccac tcacacttcc ggatggaggg 1261 agaggttgtg ctgaccacca ccacactggc acaggcggga gccttctacg cagaggttga 1321 ggcccacaac acggtgacct ctggcaccgc aaccacagtc attgagatac aagtttccga 1381 acaggagccc ccctccacag gtggcggccc ctcggaggac aagcgcttct cggtggtgga 1441 tatggcggcc ctgggcgggg tgctgggtgc gctgctgctg ctggctctcc ttggcctcgc 1501 cgtccttgtc cacaagcact atggcccccg gctcaagtgc tgctctggca aagctccgga 1561 gccccagccc caaggctttg acaaccaggc gttcctccct gaccacaagg ccaactgggc 1621 gcccgtcccc agccccacgc acgaccccaa gcccgcggag gcaccgatgc ccgcagagcc 1681 cgcacccccc ggccctgcct ccccaggcgg tgcccctgag ccccccgcag cggcccgagc 1741 tggcggaagc cccacggcgg tgaggtccat cctgaccaag gagcggcggc cggagggcgg 1801 gtacaaggct gtctggtttg gcgaggacat cgggacggag gcagacgtgg tcgttctcaa 1861 cgcgcccacc ctggacgtgg atggcgccag tgactccggc agcggcgatg agggcgaggg 1921 cgcggggagg ggtgggggtc cctacgatgc gcccggtggt gatgactcct acatctaagt 1981 ggcccctcca ccctctcccc cagccgcacg ggcactggag gtctcgctcc cccagcctcc 2041 gacccgaggc agaataaagc aaggctcccg aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2101 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2161 aaaaaaaaaa //