LOCUS BC038225 3507 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens structural maintenance of chromosomes 5, mRNA (cDNA
clone MGC:40432 IMAGE:5417143), complete cds.
ACCESSION BC038225
VERSION BC038225.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3507)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3507)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-SEP-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 64 Row: p Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24850455.
FEATURES Location/Qualifiers
source 1..3507
/db_xref="H-InvDB:HIT000052002"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:40432 IMAGE:5417143"
/tissue_type="Breast, mammary adenocarcinoma."
/clone_lib="NIH_MGC_87"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3507
/gene="SMC5"
/gene_synonym="KIAA0594"
/gene_synonym="SMC5L!"
/db_xref="GeneID:23137"
/db_xref="HGNC:HGNC:20465"
/db_xref="MIM:609386"
CDS 101..3406
/gene="SMC5"
/gene_synonym="KIAA0594"
/gene_synonym="SMC5L!"
/codon_start=1
/product="structural maintenance of chromosomes 5"
/protein_id="AAH38225.1"
/db_xref="GeneID:23137"
/db_xref="HGNC:HGNC:20465"
/db_xref="MIM:609386"
/translation="MATPSKKTSTPSPQPSKRALPRDPSSEVPSKRKNSAPQLPLLQS
SGPFVEGSIVRISMENFLTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGKPA
FMGRADKVGFFVKRGCSRGMVEIELFRASGNLVITREIDVAKNQSFWFINKKSTTQKI
VEEKVAALNIQVGNLCQFLPQDKVGEFAKLSKIELLEATEKSIGPPEMHKYHCELKNL
REKEKQLETSCKEKTEYLQKMVQRNERYKQDVERFYERKRHLDLIEMLEAKRPWVEYE
NVRQEYEEVKLVRDRVKEEVRKLKEGQIPITCRIEEMENERHNLEARIKEKATDIKEA
SQKCKQKQDVIERKDKHIEELQQALIVKQNEELDRQRRIGNTRKMIEDLQNELKTTEN
CENLQPQIDAITNDLRRIQDEKALCEGEIIDKRRERETLEKEKKSVDDHIVRFDNLMN
QKEDKLRQRFRDTYDAVLWLRNNRDKFKQRVCEPIMLTINMKDNKNAKYIENHIPSND
LRAFVFESQEDMEVFLKEVRDNKKLRVNAVIAPKSSYADKAPSRSLNELKQYGFFSYL
RELFDAPDPVMSYLCCQYHIHEVPVGTEKTRERIERVIQETRLKQIYTAEEKYVVKTS
FYSNKVISSNTSLKVAQFLTVTVDLEQRRHLEEQLKEIHRKLQAVDSGLIALRETSKH
LEHKDNELRQKKKELLERKTKKRQLEQKISSKLGSLKLMEQDTCNLEEEERKASTKIK
EINVQKAKLVTELTNLIKICTSLHIQKVDLILQNTTVISEKNKLESDYMAASSQLRLT
EQHFIELDENRQRLLQKCKELMKRARQVCNLGAEQTLPQEYQTQVPTIPNGHNSSLPM
VFQDLPNTLDEIDALLTEERSRASCFTGLNPTIVQEYTKREEEIEQLTEELKGKKVEL
DQYRENISQVKERWLNPLKELVEKINEKFSNFFSSMQCAGEVDLHTENEEDYDKYGIR
IRVKFRSSTQLHELTPHHQSGGERSVSTMLYLMALQELNRCPFRVVDEINQGMDPINE
RRVFEMVVNTACKENTSQYFFITPKLLQNLPYSEKMTVLFVYNGPHMLEPNTWNLKAF
QRRRRRITFTQPS"
BASE COUNT 1286 a 602 c 774 g 845 t
ORIGIN
1 ccacgcgtcc gagcggggcg cctgggtgga tgggcgcttg ggcgcctggg ctgccggacg
61 gtgggaacgg aagtcgctgt gggacgctga ggaagccagg atggcgactc cgagcaagaa
121 gacgtcaact ccaagccccc agccttccaa gagagctctc ccgagagacc cttcgtcgga
181 ggtcccgagc aagaggaaga attcggcccc gcagctgccg ctgttgcagt cgtccgggcc
241 tttcgtggaa ggctctatcg tccgcatctc gatggagaac ttcctaacat atgatatttg
301 tgaagtatct cctggacccc acttgaatat gatcgttgga gccaatggaa cagggaagtc
361 gagcattgtg tgtgccattt gccttggttt agctggaaaa cctgctttca tgggacgagc
421 agataaggtt gggttttttg tgaagagagg atgttctaga ggcatggttg aaattgaatt
481 gttcagggct tctggaaatc ttgtaatcac ccgtgagatt gatgtggcaa aaaatcagtc
541 cttttggttc atcaacaaaa aatctacaac ccagaaaata gtggaagaga aagttgcagc
601 cttaaatatt caagtgggga atctttgcca gtttctccct caggacaaag ttggagaatt
661 tgctaaactc agcaaaattg aactcctcga agccactgaa aagtcaattg gtcccccaga
721 aatgcacaaa tatcactgtg aactcaaaaa cttaagggag aaagaaaaac agctcgagac
781 ctcatgcaaa gagaaaactg agtatctaca gaaaatggtt cagaggaatg aaagatataa
841 acaagatgtg gagaggttct atgaacggaa gcgacattta gatttaattg agatgcttga
901 agcaaaaagg ccatgggtgg aatatgaaaa tgttcgtcag gaatatgaag aagtaaaact
961 agttcgtgac cgagtgaagg aagaggtcag aaaacttaaa gaagggcaga ttcctataac
1021 atgtcgaatt gaagaaatgg aaaacgagcg tcacaatttg gaggctcgaa tcaaagaaaa
1081 ggcaacagat attaaggagg catctcaaaa atgcaaacag aagcaagatg ttatagaaag
1141 gaaagataaa catattgagg aacttcagca ggctttaata gtaaagcaaa atgaagagct
1201 tgaccgacag aggagaatag gtaatacccg caaaatgata gaggatttgc aaaatgaact
1261 aaagaccacg gaaaactgcg agaatcttca gccccagatt gatgccatta caaatgatct
1321 gagacggatt caggatgaaa aggcattatg tgaaggcgaa ataattgata agcgaagaga
1381 gagggaaact ctagagaagg agaaaaagag tgtggacgat catattgtac gttttgacaa
1441 tcttatgaat cagaaggaag ataagctaag acagagattc cgtgacacgt atgatgctgt
1501 tttatggcta agaaataaca gagacaaatt taaacaaaga gtctgtgagc ccataatgct
1561 cacgatcaat atgaaagata ataaaaatgc caaatatatt gaaaatcata ttccatcaaa
1621 tgacttaaga gcctttgtat ttgaaagtca agaagatatg gaggttttcc tcaaagaggt
1681 tcgtgacaat aaaaaattaa gagtaaatgc tgttattgct cccaagagtt catatgcaga
1741 caaagcacct tcaagatctt tgaatgaact taaacaatac ggatttttct cttatttgag
1801 agaattattt gatgcacctg atcctgtaat gagttacctt tgctgtcagt atcatattca
1861 tgaagttcct gtaggaactg aaaagaccag agaaagaatt gaacgggtaa tacaagaaac
1921 ccgattaaaa cagatttata cagcagaaga aaagtatgtg gtgaaaactt ctttttattc
1981 aaacaaagtt atttctagta acacatctct aaaagtagcg cagtttctca ctgtcactgt
2041 ggacctagag cagagaagac acttagaaga acagctaaag gaaattcata gaaaattgca
2101 agcagtggat tcagggttga ttgccttacg tgaaacaagc aaacatctgg agcacaaaga
2161 caatgaactt agacaaaaga agaaggagct tcttgagaga aaaaccaaga aaagacaact
2221 ggaacaaaaa atcagttcca aactaggaag tttaaagctg atggaacagg atacttgcaa
2281 tcttgaagag gaagagcgaa aagcaagtac caaaatcaaa gaaataaatg ttcaaaaagc
2341 gaaacttgtt accgaattaa caaacctaat aaagatttgt acttctttgc atatacaaaa
2401 agtagattta attctccaaa atactacagt gatctctgag aagaacaaat tagaatcaga
2461 ttatatggcc gcatcttcac aactccgtct tacagagcaa catttcattg aattggatga
2521 aaatagacag agattattgc agaaatgcaa ggaacttatg aaaagagcta ggcaagtatg
2581 taacctgggt gcagagcaga ctcttcctca agaataccag acacaagtac ccaccattcc
2641 aaatggacac aactcctcac tccccatggt tttccaagac cttccaaaca cattggatga
2701 aattgatgct ttattaactg aagaaagatc aagagcttcc tgcttcacgg gactgaatcc
2761 tacaattgtt caggaatata caaaaagaga agaagaaata gaacagttaa ctgaggaact
2821 aaagggaaag aaagttgaac tagatcaata cagggaaaac atttcacagg taaaagaaag
2881 gtggcttaat cctttaaaag agctggtaga aaaaattaat gaaaaattca gcaatttttt
2941 tagttccatg cagtgtgctg gtgaagttga tctccataca gaaaatgagg aagattatga
3001 taaatatgga attcgaatta gagtcaaatt tcgaagtagt actcaactgc atgaattaac
3061 tcctcatcat caaagtggag gtgaaagaag tgtttctacc atgttatact tgatggcact
3121 tcaggagcta aatagatgtc cattcagagt agttgatgaa atcaatcagg gaatggaccc
3181 aatcaatgaa cggagagtgt ttgaaatggt tgtaaatact gcctgtaaag aaaatacatc
3241 tcaatacttt ttcataacac caaagctcct gcaaaatctt ccttattctg aaaagatgac
3301 agttttgttt gtctacaatg gccctcatat gctggaacca aacacatgga atttaaaggc
3361 tttccaaagg cggcggcgcc gtattacatt cactcaacct tcttaataaa agtaaagaga
3421 gggaacttgg gaattttttt tgttaaattc tgtttataag tatggctcaa ctgaataaaa
3481 ggagattcac taaaaaaaaa aaaaaaa
//