LOCUS BC038102 5142 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens nischarin, mRNA (cDNA clone MGC:33070 IMAGE:5268247), complete cds. ACCESSION BC038102 VERSION BC038102.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5142) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 5142) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (20-SEP-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Sep 16, 2003 this sequence version replaced BC038102.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 47 Row: m Column: 18 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 66472381. FEATURES Location/Qualifiers source 1..5142 /db_xref="H-InvDB:HIT000095097" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:33070 IMAGE:5268247" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..5142 /gene="NISCH" /gene_synonym="I-1" /gene_synonym="IRAS" /gene_synonym="KIAA0975" /db_xref="GeneID:11188" /db_xref="HGNC:HGNC:18006" CDS 39..4553 /gene="NISCH" /gene_synonym="I-1" /gene_synonym="IRAS" /gene_synonym="KIAA0975" /codon_start=1 /product="nischarin" /protein_id="AAH38102.1" /db_xref="GeneID:11188" /db_xref="HGNC:HGNC:18006" /translation="MATARTFGPEREAEPAKEARVVGSELVDTYTVYIIQVTDGSHEW TVKHRYSDFHDLHEKLVAERKIDKNLLPPKKIIGKNSRSLVEKREKDLEVYLQKLLAA FPGVTPRVLAHFLHFHFYEINGITAALAEELFEKGEQLLGAGEVFAIGPLQLYAVTEQ LQQGKPTCASGDAKTDLGHILDFTCRLKYLKVSGTEGPFGTSNIQEQLLPFDLSIFKS LHQVEISHCDAKHIRGLVASKPTLATLSVRFSATSMKEVLVPEASEFDEWEPEGTTLE GPVTAVIPTWQALTTLDLSHNSISEIDESVKLIPKIEFLDLSHNGLLVVDNLQHLYNL VHLDLSYNKLSSLEGLHTKLGNIKTLNLAGNLLESLSGLHKLYSLVNLDLRDNRIEQM EEVRSIGSLPCLEHVSLLNNPLSIIPDYRTKVLAQFGERASEVCLDDTVTTEKELDTV EVLKAIQKAKEVKSKLSNPEKKGGEDSRLSAAPCIRPSSSPPTVAPASASLPQPILSN QGIMFVQEEALASSLSSTDSLTPEHQPIAQGCSDSLESIPAGQAASDDLRDVPGAVGG ASPEHAEPEVQVVPGSGQIIFLPFTCIGYTATNQDFIQRLSTLIRQAIERQLPAWIEA ANQREEGQGEQGEEEDEEEEEEEDVAENRYFEMGPPDVEEEEGGGQGEEEEEEEEDEE AEEERLALEWALGADEDFLLEHIRILKVLWCFLIHVQGSIRQFAACLVLTDFGIAVFE IPHQESRGSSQHILSSLRFVFCFPHGDLTEFGFLMPELCLVLKVRHSENTLFIISDAA NLHEFHADLRSCFAPQHMAMLCSPILYGSHTSLQEFLRQLLTFYKVAGGCQERSQGCF PVYLVYSDKRMVQTAAGDYSGNIEWASCTLCSAVRRSCCAPSEAVKSAAIPYWLLLTP QHLNVIKADFNPMPNRGTHNCRNRNSFKLSRVPLSTVLLDPTRSCTQPRGAFADGHVL ELLVGYRFVTAIFVLPHEKFHFLRVYNQLRASLQDLKTVVIAKTPGTGGSPQGSFADG QPAERRASNDQRPQEVPAEALAPAPVEVPAPAPAAASASGPAKTPAPAEASTSALVPE ETPVEAPAPPPAEAPAQYPSEHLIQATSEENQIPPHLPACPSLRHVASLRGSAIIELF HSSIAEVENEELRHLMWSSVVFYQTPGLEVTACVLLSTKAVYFVLHDGLRRYFSEPLQ DFWHQKNTDYNNSPFHISQCFVLKLSDLQSVNVGLFDQHFRLTGSTPMQVVTCLTRDS YLTHCFLQHLMVVLSSLERTPSPEPVDKDFYSEFGNKTTGKMENYELIHSSRVKFTYP SEEEIGDLTFTVAQKMAEPEKAPALSILLYVQAFQVGMPPPGCCRGPLRPKTLLLTSS EIFLLDEDCVHYPLPEFAKEPPQRDRYRLDDGRRVRDLDRVLMGYQTYPQALTLVFDD VQGHDLMGSVTLDHFGEVPGGPARASQGREVQWQVFVPSAESREKLISLLARQWEALC GRELPVELTG" BASE COUNT 1055 a 1595 c 1476 g 1016 t ORIGIN 1 agtctgcgcc gggcggcggt ggcggcggag acccgaacat ggcgaccgcg cgcaccttcg 61 ggcccgagcg ggaagccgag ccggccaagg aagcgcgcgt cgtgggctcg gagcttgtgg 121 acacttatac ggtttacatc atccaggtca ctgatggcag ccatgagtgg acagtaaagc 181 accgctacag cgacttccat gacctgcatg aaaagctcgt tgcagagaga aagattgata 241 aaaacctgct tccgcccaaa aagataattg ggaaaaactc aagaagcttg gtggagaaga 301 gggagaagga tctggaggtc tacctccaga agctcctggc tgccttccct ggcgtgaccc 361 ccagagtact ggcccacttc ttgcattttc acttctatga gataaatggc atcaccgcgg 421 cactggctga agagctcttt gagaaaggag aacagctcct gggggccggc gaggtctttg 481 ccattggacc cctgcagctg tatgccgtca cggagcagct gcagcaggga aagcccacgt 541 gcgccagtgg ggatgccaag accgacctcg ggcacatcct ggacttcacc tgtcgcctta 601 agtaccttaa ggtttctggc acagaaggac cttttgggac cagcaacatt caggagcagc 661 tcctgccgtt cgacctatca atattcaagt ccctgcatca ggtggagata agtcactgtg 721 atgctaagca catcagaggg ctggtcgcat cgaagcccac cttagccacg ctgagtgtcc 781 gcttctcagc aacctcgatg aaggaagtcc ttgttcctga agcctcagaa tttgatgagt 841 gggagcctga aggcacaacc ctagaaggcc ctgtgactgc cgtcatcccc acttggcagg 901 cattgaccac gcttgacctg agccacaaca gcatctccga gatcgacgag tctgtgaaac 961 tgatcccaaa gattgagttc ctggacctga gtcacaatgg attgctggtt gtggacaatc 1021 tgcagcacct gtataacctt gtgcatctgg acctgtccta caacaagctc tcctccttgg 1081 aagggcttca caccaagctg gggaacatca agaccttaaa cctggcaggc aacctcctag 1141 agagtctgag tggcctgcac aagctctact cactggtcaa cctggatctc cgggacaaca 1201 ggatcgaaca gatggaggag gtccggagca taggcagcct cccgtgtctg gagcacgtgt 1261 ctctgctgaa caaccctctg agcatcatcc ccgactaccg gaccaaggtg ctggctcagt 1321 tcggagagag ggcctcagag gtctgtctgg atgacacagt gaccacagag aaggagctgg 1381 acactgtgga agtgctgaaa gcaattcaga aagccaagga ggtcaagtcc aaactgagca 1441 acccagagaa gaagggtggt gaagactccc ggctctcagc tgccccctgc atcagaccca 1501 gcagctcccc tcccactgtg gctcccgcat ctgcctccct gccccagccc atcctctcta 1561 accaaggaat catgttcgtt caggaggagg ccctggccag cagcctctcg tccactgaca 1621 gtctgactcc cgagcaccag cccattgccc agggatgttc tgattccttg gagtccatcc 1681 ctgcgggaca ggcagcttcc gatgatttaa gggacgtgcc aggagctgtt ggtggtgcaa 1741 gcccagaaca tgccgagccg gaggtccagg tggtgccggg gtctggccag atcatcttcc 1801 tgcccttcac ctgcattggc tacacggcca ccaatcagga cttcatccag cgcctgagca 1861 cactgatccg gcaggccatc gagcggcagc tgcctgcctg gatcgaggct gccaaccagc 1921 gggaggaggg ccagggtgaa cagggcgagg aggaggatga ggaggaggaa gaagaggagg 1981 acgtggctga gaaccgctac tttgaaatgg ggcccccaga cgtggaggag gaggagggag 2041 gaggccaggg ggaggaagag gaggaggaag aggaggatga agaggccgag gaggagcgcc 2101 tggctctgga atgggccctg ggcgcggacg aggacttcct gctggagcac atccgcatcc 2161 tcaaggtgct gtggtgcttc ctgatccatg tgcagggcag tatccgccag ttcgccgcct 2221 gccttgtgct caccgacttc ggcatcgcag tcttcgagat cccgcaccag gagtctcggg 2281 gcagcagcca gcacatcctc tcctccctgc gctttgtctt ttgcttcccg catggcgacc 2341 tcaccgagtt tggcttcctc atgccggagc tgtgtctggt gctcaaggta cggcacagtg 2401 agaacacgct cttcattatc tcggacgccg ccaacctgca cgagttccac gcggacctgc 2461 gctcatgctt tgcaccccag cacatggcca tgctgtgtag ccccatcctc tacggcagcc 2521 acaccagcct gcaggagttc ctgcgccagc tgctcacctt ctacaaggtg gctggcggct 2581 gccaggagcg cagccagggc tgcttccccg tctacctggt ctacagtgac aagcgcatgg 2641 tgcagacggc cgccggggac tactcaggca acatcgagtg ggccagctgc acactctgtt 2701 cagccgtgcg gcgctcctgc tgcgcgccct ctgaggccgt caagtccgcc gccatcccct 2761 actggctgtt gctcacgccc cagcacctca acgtcatcaa ggccgacttc aaccccatgc 2821 ccaaccgtgg cacccacaac tgtcgcaacc gcaacagctt caagctcagc cgtgtgccgc 2881 tctccaccgt gctgctggac cccacacgca gctgtaccca gcctcggggc gcctttgctg 2941 atggccacgt gctagagctg ctcgtggggt accgctttgt cactgccatc ttcgtgctgc 3001 cccacgagaa gttccacttc ctgcgcgtct acaaccagct gcgggcctcg ctgcaggacc 3061 tgaagactgt ggtcatcgcc aagacccccg ggacgggagg cagcccccag ggctcctttg 3121 cggatggcca gcctgccgag cgcagggcca gcaatgacca gcgtccccag gaggtcccag 3181 cagaggctct ggccccggcc ccagtggaag tcccagctcc agcccctgca gcagcctcag 3241 cctcaggccc agcgaagact ccggccccag cagaggcctc aacttcagct ttggtcccag 3301 aggagacgcc agtggaagct ccagccccac ccccagccga ggcccctgcc cagtacccga 3361 gtgagcacct catccaggcc acctcggagg agaatcagat ccccccgcac ttgcctgcct 3421 gcccgtcgct ccggcacgtc gccagcctgc ggggcagcgc catcatcgag ctcttccaca 3481 gcagcattgc tgaggttgaa aacgaggagc tgaggcacct catgtggtcc tcggtggtgt 3541 tctaccagac cccagggctg gaggtgactg cctgcgtgct gctctccacc aaggctgtgt 3601 actttgtgct ccacgacggc ctccgccgct acttctcaga gccactgcag gatttctggc 3661 atcagaaaaa caccgactac aacaacagcc ctttccacat ctcccagtgc ttcgtgctaa 3721 agcttagtga cctgcagtca gtcaatgtgg ggcttttcga ccagcatttc cggctgacgg 3781 gttccacccc gatgcaggtg gtcacgtgct tgacgcggga cagctacctg acgcactgct 3841 tcctccagca cctcatggtc gtgctgtcct ctctggaacg cacgccctcg ccggagcctg 3901 ttgacaagga cttctactcc gagtttggga acaagaccac agggaagatg gagaactacg 3961 agctgatcca ctctagtcgc gtcaagttta cctaccccag tgaggaggag attggggacc 4021 tgacgttcac tgtggcccaa aagatggctg agccagagaa ggccccagcc ctcagcatcc 4081 tgctgtacgt gcaggccttc caggtgggca tgccaccccc tgggtgctgc aggggccccc 4141 tgcgccccaa gacactcctg ctcaccagct ccgagatctt cctcctggat gaggactgtg 4201 tccactaccc actgcccgag tttgccaaag agccgccgca gagagacagg taccggctgg 4261 acgatggccg ccgcgtccgg gacctggacc gagtgctcat gggctaccag acctacccgc 4321 aggccctcac cctcgtcttc gatgacgtgc aaggtcatga cctcatgggc agtgtcaccc 4381 tggaccactt tggggaggtg ccaggtggcc cggctagagc cagccagggc cgtgaagtcc 4441 agtggcaggt gtttgtcccc agtgctgaga gcagagagaa gctcatctcg ctgttggctc 4501 gccagtggga ggccctgtgt ggccgtgagc tgcctgtcga gctcaccggc tagcccaggc 4561 cacagccagc ctgtcgtgtc cagcctgacg cctactgggg cagggcagca ggcttttgtg 4621 ttctctaaaa atgttttatc ctccctttgg taccttaatt tgactgtcct cgcagagaat 4681 gtgaacatgt gtgtgtgttg tgttaattct ttctcatgtt gggagtgaga atgccgggcc 4741 cctcagggct gtcggtgtgc tgtcagcctc ccacaggtgg tacagccgtg cacaccagtg 4801 tcgtgtctgc tgttgtggga ccgttgttaa cacgtgacac tgtgggtctg actttctctt 4861 ctacacgtcc tttcctgaag tgtcgagtcc agtcctttgt tgctgttgct gttgctgttg 4921 ctgttgctgt tggcatcttg ctgctaatcc tgaggctggt agcagaatgc acattggaag 4981 ctcccacccc atattgttct tcaaagtgga ggtctcccct gatccagaca agtgggagag 5041 cccgtggggg caggggacct ggagctgcca gcaccaagcg tgattcctgc tgcctgtatt 5101 ctctattcca ataaagcaga gtttgacaaa aaaaaaaaaa aa //