LOCUS BC037341 2520 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide
N-acetylgalactosaminyltransferase-like 4, mRNA (cDNA clone
MGC:43305 IMAGE:5265475), complete cds.
ACCESSION BC037341
VERSION BC037341.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2520)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2520)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-SEP-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC037341.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 73 Row: l Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38348337.
FEATURES Location/Qualifiers
source 1..2520
/db_xref="H-InvDB:HIT000051907"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:43305 IMAGE:5265475"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2520
/gene="GALNTL4"
/gene_synonym="GalNAc-T15"
/gene_synonym="GALNT15"
/gene_synonym="GALNT18"
/gene_synonym="MGC71806"
/db_xref="GeneID:374378"
/db_xref="HGNC:HGNC:30488"
CDS 411..2234
/gene="GALNTL4"
/gene_synonym="GalNAc-T15"
/gene_synonym="GALNT15"
/gene_synonym="GALNT18"
/gene_synonym="MGC71806"
/codon_start=1
/product="UDP-N-acetyl-alpha-D-galactosamine:polypeptide
N-acetylgalactosaminyltransferase-like 4"
/protein_id="AAH37341.3"
/db_xref="GeneID:374378"
/db_xref="HGNC:HGNC:30488"
/translation="MVCTRKTKTLVSTCVILSGMTNIICLLYVGWVTNYIASVYVRGQ
EPAPDKKLEEDKGDTLKIIERLDHLENVIKQHIQEAPAKPEEAEAEPFTDSSLFAHWG
QELSPEGRRVALKQFQYYGYNAYLSDRLPLDRPLPDLRPSGCRNLSFPDSLPEVSIVF
IFVNEALSVLLRSIHSAMERTPPHLLKEIILVDDNSSNEELKEKLTEYVDKVNSQKPG
FIKVVRHSKQEGLIRSRVSGWRAATAPVVALFDAHVEFNVGWAEPVLTRIKENRKRII
SPSFDNIKYDNFEIEEYPLAAQGFDWELWCRYLNPPKAWWKLENSTAPIRSPALIGCF
IVDRQYFQEIGLLDEGMEVYGGENVELGIRVWQCGGSVEVLPCSRIAHIERAHKPYTE
DLTAHVRRNALRVAEVWMDEFKSHVYMAWNIPQEDSGIDIGDITARKALRKQLQCKTF
RWYLVSVYPEMRMYSDIIAYGVLQNSLKTDLCLDQGPDTENVPIMYICHGMTPQNVYY
TSSQQIHVGILSPTVDDDDNRCLVDVNSRPRLIECSYAKAKRMKLHWQFSQGGPIQNR
KSKRCLELQENSDLEFGFQLVLQKCSGQHWSITNVLRSLAS"
BASE COUNT 592 a 675 c 756 g 497 t
ORIGIN
1 ggttctccta gcagcgcggg ccggtcggac cgccaaggca gccggcgctg gcgatgggaa
61 gcggcgtggc cgccgacaca ggcagtggca aagtttccca gacgtacaca tctggacgcg
121 cggctgccgg ctacccgtga cccctctagg aagggttcag ggatttttaa tttggaaaaa
181 aatccacctg gtttcctttg tcaaggtctc tccgggtggc cagcggcagg agctgcaaac
241 ttgggcacgg cggctacacc ggcagcggac cgggctttgg aggacctcgg gactcaggtg
301 ctgaggtgcc cagcggctcc ggacgtgcta cggggtgcga gcgcggggga gttcggggcg
361 cacgacaagg aagggccccc gggagctcta tatggaggaa ggagcccaga atggtgtgca
421 ccaggaagac caaaactttg gtgtccactt gcgtgatcct gagcggcatg actaacatca
481 tctgcctgct ctacgtgggc tgggtcacca actacatcgc cagcgtgtat gtgcgggggc
541 aggagccggc gcccgacaag aagctggagg aagacaaagg ggacactctg aagattattg
601 agcggctgga ccacctggag aatgtcatca agcagcacat tcaagaggct cctgccaagc
661 ctgaggaggc agaggccgag cccttcacag actcctctct gtttgcacac tggggccagg
721 agctcagccc cgaaggccgg cgcgtggccc tgaagcaatt ccagtactac ggctacaacg
781 cctacctcag cgaccgcctg cccctggacc ggcccctgcc tgacctcaga cccagtgggt
841 gccgtaacct ctcatttcct gacagcctgc cagaggtgag catcgtgttc atcttcgtca
901 atgaagcgct ttcagtgctg ctgcgctcca tccactcggc catggaacgc acgcccccac
961 atctgctcaa ggagatcatt ctggtggatg acaacagcag taacgaggaa ctgaaggaga
1021 agctgaccga atatgtggac aaggtgaaca gccagaagcc aggcttcatc aaagtcgtgc
1081 gtcacagcaa gcaggaaggc ctcatccgct ccagggtcag tggctggagg gcggccactg
1141 cccctgtggt ggcactcttt gatgcccacg tggagttcaa tgtgggctgg gctgaacctg
1201 tactcacccg catcaaggag aaccggaagc ggatcatctc gccatccttt gataacatca
1261 aatatgacaa ctttgagata gaagagtacc cgctggctgc ccagggcttt gactgggagc
1321 tgtggtgccg ctacctaaat ccccccaagg cctggtggaa gctggagaac tccacagcgc
1381 caatcaggag ccctgccctc attggctgct tcattgtgga ccggcagtac ttccaggaga
1441 tcggcctgct ggacgaaggc atggaagtct acgggggcga gaatgtggag cttgggatca
1501 gggtgtggca gtgtggcggg agtgtggagg tcctgccctg ctcacggatt gcccacattg
1561 agcgagccca caagccctac acagaggacc tcaccgccca tgtccgcagg aacgctctca
1621 gggtggctga agtctggatg gatgaattta aaagccacgt ctacatggca tggaacatac
1681 cgcaggagga ctcaggaatt gacattgggg acatcactgc aaggaaggct ctcaggaaac
1741 agctgcagtg caagaccttc cggtggtacc tggtcagcgt gtacccagag atgaggatgt
1801 actccgacat cattgcctat ggagtgctgc agaattctct gaagactgat ttgtgtcttg
1861 accaggggcc agatacagag aatgtcccca tcatgtacat ctgccatggg atgacgcctc
1921 agaacgtgta ctacacgagc agtcagcaga tccatgtggg cattctgagc cccaccgtgg
1981 atgatgatga caaccgatgc ctggtggacg tcaacagccg gccccggctc atcgaatgca
2041 gctacgccaa agccaagagg atgaagcttc actggcagtt ctctcaggga ggacccatcc
2101 agaaccgcaa gtctaagcgc tgtctggagc tgcaggagaa tagcgacctg gagttcggct
2161 tccagctggt gttgcagaag tgctcgggcc agcactggag catcaccaac gtcctgagga
2221 gcctggcgtc ctgacccacc ggggccactt ccggctgcct ctttgctact gtgtagcacc
2281 tgctgcaacg ttgcctgctg tccacgtggg gttgtttgga gtctggggaa ccaggttagt
2341 gggcccccaa gaagagcttt ttatttccta ttcaattttc atggagttta tagaaagatg
2401 ctgattggta ggtgatggta tgatatcaaa ctattttgca gttgtaaata ggggacagat
2461 ggaaaatatt tataactgac aataaaatat tattaagaaa agggaaaaaa aaaaaaaaaa
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