LOCUS BC037302 1968 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens retinol dehydrogenase 11 (all-trans/9-cis/11-cis), mRNA (cDNA clone MGC:33738 IMAGE:5261204), complete cds. ACCESSION BC037302 VERSION BC037302.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1968) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1968) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-SEP-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 47 Row: f Column: 7 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 20070271. FEATURES Location/Qualifiers source 1..1968 /db_xref="H-InvDB:HIT000051899" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:33738 IMAGE:5261204" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..1968 /gene="RDH11" /gene_synonym="ARSDR1" /gene_synonym="CGI-82" /gene_synonym="FLJ32633" /gene_synonym="HCBP12" /gene_synonym="MDT1" /gene_synonym="PSDR1" /gene_synonym="RALR1" /gene_synonym="SCALD" /db_xref="GeneID:51109" /db_xref="HGNC:HGNC:17964" /db_xref="MIM:607849" CDS 68..1024 /gene="RDH11" /gene_synonym="ARSDR1" /gene_synonym="CGI-82" /gene_synonym="FLJ32633" /gene_synonym="HCBP12" /gene_synonym="MDT1" /gene_synonym="PSDR1" /gene_synonym="RALR1" /gene_synonym="SCALD" /codon_start=1 /product="retinol dehydrogenase 11 (all-trans/9-cis/11-cis)" /protein_id="AAH37302.1" /db_xref="GeneID:51109" /db_xref="HGNC:HGNC:17964" /db_xref="MIM:607849" /translation="MVELMFPLLLLLLPFLLYMAAPQIRKMLSSGVCTSTVQLPGKVV VVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLS DTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLL LEKLKESAPSRIVNVSSLAHHLGRIHFHNLQGEKFYNAGLAYCHSKLANILFTQELAR RLKGSGVTTYSVHPGTVQSELVRHSSFMRWMWWLFSFFIKTPQQGAQTSLHCALTEGL EILSGNHFSDCHVAWVSAQARNETIARRLWDVSCDLLGLPID" BASE COUNT 572 a 453 c 470 g 473 t ORIGIN 1 agcgggaagc catagtcggc gagcaacgct ggagcatccc gctctggtgc cgctgcagcc 61 ggcagagatg gttgagctca tgttcccgct gttgctcctc cttctgccct tccttctgta 121 tatggctgcg ccccaaatca ggaaaatgct gtccagtggg gtgtgtacat caactgttca 181 gcttcctggg aaagtagttg tggtcacagg agctaataca ggtatcggga aggagacagc 241 caaagagctg gctcagagag gagctcgagt atatttagct tgccgggatg tggaaaaggg 301 ggaattggtg gccaaagaga tccagaccac gacagggaac cagcaggtgt tggtgcggaa 361 actggacctg tctgatacta agtctattcg agcttttgct aagggcttct tagctgagga 421 aaagcacctc cacgttttga tcaacaatgc aggagtgatg atgtgtccgt actctaagac 481 agcagatggc tttgagatgc acataggagt caaccacttg ggtcacttcc tcctaaccca 541 tctgctgcta gagaaactaa aggaatcagc cccatcaagg atagtaaatg tgtcttccct 601 cgcacatcac ctgggaagga tccacttcca taacctgcag ggcgagaaat tctacaatgc 661 aggcctggcc tactgtcaca gcaagctagc caacatcctc ttcacccagg aactggcccg 721 gagactaaaa ggctctggcg ttacgacgta ttctgtacac cctggcacag tccaatctga 781 actggttcgg cactcatctt tcatgagatg gatgtggtgg cttttctcct ttttcatcaa 841 gactcctcag cagggagccc agaccagcct gcactgtgcc ttaacagaag gtcttgagat 901 tctaagtggg aatcatttca gtgactgtca tgtggcatgg gtctctgccc aagctcgtaa 961 tgagactata gcaaggcggc tgtgggacgt cagttgtgac ctgctgggcc tcccaataga 1021 ctaacaggca gtgccagttg gacccaagag aagactgcag cagactacac agtacttctt 1081 gtcaaaatga ttctccttca aggttttcaa aacctttagc acaaagagag caaaaccttc 1141 cagccttgcc tgcttggtgt ccagttaaaa ctcagtgtac tgccagattc gtctaaatgt 1201 ctgtcatgtc cagatttact ttgcttctgt tactgccaga gttactagag atatcataat 1261 aggataagaa gaccctcata tgacctgcac agctcatttt ccttctgaaa gaaactacta 1321 cctaggagaa tctaagctat agcagggatg atttatgcaa atttgaacta gcttctttgt 1381 tcacaattca gttcctccca accaaccagt cttcacttca agagggccac actgcaacct 1441 cagcttaaca tgaataacaa agactggctc aggagcaggg cttgcccagg catggtggat 1501 caccggaggt cagtagttca agaccagcct ggccaacatg gtgaaacccc acctctacta 1561 aaaattgtgt atatctttgt gtgtcttcct gtttatgtgt gccaagggag tattttcaca 1621 aagttcaaaa cagccacaat aatcagagat ggagcaaacc agtgccatcc agtctttatg 1681 caaatgaaat gctgcaaagg gaagcagatt ctgtatatgt tggtaactac ccaccaagag 1741 cacatgggta gcagggaaga agtaaaaaaa gagaaggaga atactggaag ataatgcaca 1801 aaatgaaggg actagttaag gattaactag ccctttaagg attaactagt taaggattaa 1861 tagcaaaaga tattaaatat gctaacatag ctatggagga attgagggca agcacccagg 1921 actgatgagg tcttaacaaa aaccagtgtg caaaaaaaaa aaaaaaaa //