LOCUS BC037292 4109 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens family with sequence similarity 62 (C2 domain
containing), member C, mRNA (cDNA clone MGC:33352 IMAGE:4837811),
complete cds.
ACCESSION BC037292
VERSION BC037292.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4109)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4109)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-SEP-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: d Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46195742
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..4109
/db_xref="H-InvDB:HIT000051891"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33352 IMAGE:4837811"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4109
/gene="FAM62C"
/gene_synonym="CHR3SYT"
/db_xref="GeneID:83850"
/db_xref="HGNC:HGNC:24295"
CDS 219..1724
/gene="FAM62C"
/gene_synonym="CHR3SYT"
/codon_start=1
/product="FAM62C protein"
/protein_id="AAH37292.1"
/db_xref="GeneID:83850"
/db_xref="HGNC:HGNC:24295"
/translation="MRAEEPCAPGAPSALGAQRTPGPELRLSSQLLPELCTFVVRVLF
YLGPVYLAGYLGLSITWLLLGALLWMWWRRNRRGKLGRLAAAFEFLDNEREFISRELR
GQHLPAWIHFPDVERVEWANKIISQTWPYLSMIMESKFREKLEPKIREKSIHLRTFTF
TKLYFGQKCPRVNGVKAHTNTCNRRRVTVDLQICYIGDCEISVELQKIQAGVNGIQLQ
GTLRVILEPLLVDKPFVGAVTVFFLQKQHLQINWTGLTNLLDAPGINDVSDSLLEDLI
ATHLVLPNRVTVPVKKGLDLTNLRFPLPCGVIRVHLLEAEQLAQKDNFLGLRGKSDPY
AKVSIGLQHFRSRTIYRNLNPTWNEVFEFMVYEVPGQDLEVDLYDEDTDRDDFLGSLQ
ICLGDVMTNRVVDEWFVLNDTTSGRLHLRLEWLSLLTDQEVLTEDHGGLSTAILVVFL
ESACNLPRNPFDYLNGEYRAKKLSRFARVKQGQQRPFFLCQTICRQEDTYK"
BASE COUNT 1054 a 1053 c 1095 g 907 t
ORIGIN
1 agcgggagga ctggggcggc gcggcgcggc gcggtgcatt tccaggcgct gctctccgtc
61 gcagagaacc ctgagctcgg cgcgccgaga gtcccagcag ggcaaggggg cgcggcgtcc
121 tggtcctcga gcttgggaga cagatgcgca tgggcgtggg ggcatgcgga cctaagctcg
181 ggtgaagctc tcgggaaggg caagactgcg gcgacgagat gcgagcagag gagccctgcg
241 cccccggggc ccccagcgcc ctgggagccc agcgcacgcc gggccccgag ctgcgcctgt
301 ccagccagct gctgcccgag ctctgtacct tcgtggtgcg cgtgctgttc tacctggggc
361 ctgtctacct agctggctac ctggggctca gcataacctg gttgctgctc ggcgccctgc
421 tgtggatgtg gtggcgcagg aaccgccgcg ggaagcttgg gcgcctggcc gccgccttcg
481 aattccttga caatgaacgc gagttcatca gccgcgagct gcggggccag cacctgccag
541 cctggatcca cttcccggac gtggagcggg tcgagtgggc caacaagatc atctctcaga
601 cctggcccta cctaagcatg atcatggaaa gcaagttccg ggagaaactt gagcccaaga
661 tccgagagaa gagcatccac ctgaggacct ttacctttac caagctctac tttggacaga
721 agtgtcccag ggtcaacggt gtcaaggcac acactaatac gtgcaaccga agacgtgtga
781 ctgtggacct gcagatctgc tacatcgggg actgtgagat cagtgtggag ctgcagaaga
841 ttcaggctgg tgtgaacggg atccagttgc agggcaccct gcgggtcatc ctggagcccc
901 tcctagtgga caagcccttt gtgggagccg tgactgtgtt cttccttcag aagcagcacc
961 tacagatcaa ctggactggc ctgaccaacc tgctggatgc gccgggaatc aatgatgtgt
1021 cagacagctt actggaggac ctcattgcca cccacctggt gctgcccaac cgtgtgactg
1081 tgcctgtgaa gaaggggctg gatctgacca acctgcgctt ccctctgccc tgtggggtga
1141 tcagagtgca cttgctggag gcagagcagc tggcccagaa ggacaacttt ctggggctcc
1201 gaggcaagtc agatccctac gccaaggtga gcatcggcct acagcatttc cggagtagga
1261 ccatctacag gaacctgaac cccacctgga acgaagtgtt tgagttcatg gtgtacgaag
1321 tccctggaca ggacctggag gtagacctgt atgatgagga taccgacagg gatgacttcc
1381 tgggcagcct gcagatctgc cttggagatg tcatgaccaa cagagtggtg gatgagtggt
1441 ttgtcctgaa tgacacaacc agcgggcggc tgcacctgcg gctggagtgg ctttcattgc
1501 ttactgacca agaagttctg actgaggacc atggtggcct ttccactgcc attctcgtgg
1561 tcttcttgga gagtgcctgc aacttgccga gaaacccttt tgactacctg aatggtgaat
1621 atcgagccaa aaaactctcc aggtttgcca gagtgaaaca aggtcagcaa agacccttct
1681 tcctatgtca aactatctgt aggcaagaag acacatacaa gtaagacctg tccccacaac
1741 aaggaccctg tgtggagcca ggtgttctcc ttctttgtgc acaatgtggc cactgagcgg
1801 ctccatctga aggtttgatg gaagaagggc tcttgaaaca gagttaagag gtttctaagc
1861 caggcgggct gggaagcttg aagtgcacct tgagcaggtt ctcctggcag cgtttaaagt
1921 cagccccttg tatgtaagag aggacactgg ggccccacaa ggcctcatct ccttaaggct
1981 agtgcctgag gtcactgtat agggggatgt gggaggataa atcctcaagt cccttgactt
2041 tccctgcaaa agggtcttta tatttgctac acagtaccca gagcagccta tctacacagg
2101 acattaataa tggtgtactt taaaaaatat atgtttcatt taatcttcac aagatctgta
2161 gagtaagcaa agagaggcaa aaacaatgtc ttgtccaaga tctcatgacc aacaagtggt
2221 ggagctggga tcttttaggg ccctgagccc tgcctggaga gcagcacagc tcatcagtcc
2281 ccaaagcccc ctggctctgg gcatttgaca gactagctca tacagatcat aattgcctct
2341 actctgagtc actatcttcc ctgacagaag acaaggacca ggtctggcct gatcccattc
2401 tagttttcag aataggacca gatgcccata gaagcacagt acagactgaa gtaaacccaa
2461 acttggctgg ggctcagatg ctagtagtgg agtggtgggg cttggttatc ctcttgtttt
2521 gtgactggac cactgcccag gtgcttgatg atgaccagga gtgtgctctg ggaatgctgg
2581 aggtccccct gtgccagatc ctcccctatg ctgacctcac tcttgagcag cgctttcagc
2641 tggaccactc aggcctggac agcctcatct ccatgaggct ggtgcttcgg ttcctgcaag
2701 tggaggaacg agagctgggg agcccataca caggacctga agccctaaag aaaggccctc
2761 tgctcatcaa gaaagtggct accaaccagg gtcccaaagc ccaacctcag gaagaaggcc
2821 ctacagattt gccatgtccc ccagaccctg cttctgatac taaggacgta tccaggagta
2881 ccacaaccac caccagtgct accaccgttg ccactgagcc cacatcccaa gagacaggcc
2941 cagagcctaa aggcaaggac agtgccaaaa ggttctgtga gcccatcggg gagaagaaga
3001 gtccagccac catcttcctg actgtcccag gtccccactc tccagggccc atcaagtcac
3061 ccagacccat gaaatgccct gcctccccat tcgcatggcc gcccaagagg ctggctccca
3121 gcatgtcctc gctcaactcc ttggcctctt cttgctttga cctggcagat atcagcctca
3181 acattgagta tgcacctctc tgcttaatct tttctaaaat cgcctgtatg aaaaatacct
3241 cgctggatgg aaaagtagat atgaacttac atttctgtgc aagttgtttt ttcacaaaat
3301 atcttcctaa gaggcagcat ggtgtggtag aaagaacaca ggacaaggga gagagagcca
3361 aacaggctgt ttatggctct agctgcgtac tgactataaa atagatgctg gactctggtt
3421 gaggtgggga cctcaggcga cggcagctgg gtgagattca gctcacagtg cgctatgtgt
3481 gtctgcggcg ctgcctcagc gtgctaatca atggctgcag aaacctaaca ccatgtacca
3541 gcagtggagc tgatccctac gtccgtgtct acttgttgcc agaaaggaag tgggcatgtc
3601 gtaagaagac ttcagtgaag cggaagacct tggaacccct gtttgatgag acatttgaat
3661 tttttgttcc catggaagaa gtaaagaaga ggtcactaga tgttgcagtg aaaaatagta
3721 ggccacttgg ctcacacaga agaaaggagt taggaaaagt actgattgac ttatcaaaag
3781 aagatctgat taagggcttt tcacaatggt atgagctgac tccaaatgga cagcccagaa
3841 gctgatgatg agaattctta tcactcacct ttatattaaa atgtatatat atgtatatat
3901 tttttccttt ggatcactta catccaatat atgtatattt tgtcatttaa atcagaacaa
3961 ccacttgaaa ttatatacat acaattcttg tgtggaattt aactccatga ctgaatagca
4021 taaggaagag gttatttaaa agcaagaact aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
4081 aaaaaaaaaa aaagaaaaaa aaaaaaaaa
//