LOCUS BC036849 2410 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens ataxin 7-like 2, mRNA (cDNA clone MGC:46565
IMAGE:5248803), complete cds.
ACCESSION BC036849
VERSION BC036849.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2410)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2410)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-AUG-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 78 Row: k Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31377554
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..2410
/db_xref="H-InvDB:HIT000051831"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:46565 IMAGE:5248803"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2410
/gene="ATXN7L2"
/db_xref="GeneID:127002"
/db_xref="HGNC:HGNC:28713"
CDS 16..1758
/gene="ATXN7L2"
/codon_start=1
/product="ATXN7L2 protein"
/protein_id="AAH36849.1"
/db_xref="GeneID:127002"
/db_xref="HGNC:HGNC:28713"
/translation="MAVRERAAAAMAALERRVPSLDDFAGQSWSSWVERADLPAADGA
ELEESSKNTKKLDAMTLIKEDMSIFGHCPAHDDFYLVVCNHCSQVVKPQAFQKHCERR
HGPLSKLYGRAPPPPPAPASSQKCHVVNGQGPACRAPGSTKTSSREKGQGSRSRGHQP
PEKTQKDNLCQPGGLTKDSPGKPPMAPPSKEPPGRENIEIIPSEGSSHWAEGSPPEKE
PSGTRLPPKTHRKMARKECDLNRQCGVINPETKKICTRLLTCKIHSVHQRREVQGRAK
DFDVLVAELKANSRKGESPKEKSPGRKEQVLERPSQELPSSVQVVAAVAAPSSTFSVR
AKQTYPYCALPRSRASSESELDDEGPCGGDGDPGLFPFPMPRGGTQASSEESEEEGTS
DDLHPPPDCHYATRPPRPQAFCTFGSRLVSPGCYVFSRRLDRFCSALSSMLERHLSTH
MWKKIPPAAEPPVHLVNSPLSAPLSPSSTGTCPRLPGPTLRPACPASMPPTKDNLVPS
YPAGSPSVAAACSQAECMGEPGYHLTTACQHAIPVLQQAAAFQGQQVIQRQGRGGGGG
PFSKAEVIPWPYHS"
BASE COUNT 604 a 762 c 653 g 391 t
ORIGIN
1 gcgtccgcgg cggtgatggc ggtgcgtgaa cgcgcggcgg cagcaatggc cgctctggag
61 cggcgggtgc cgagtctcga tgacttcgcg ggacagagct ggagctcgtg ggtggagcgg
121 gccgacctgc ccgcggctga cggggctgag ctggaggaga gtagcaaaaa cacgaagaag
181 ttggatgcca tgaccctcat taaagaagac atgtccatct tcgggcactg ccctgcccat
241 gatgacttct acttggttgt gtgtaaccac tgcagccaag tggtgaagcc tcaagctttc
301 cagaagcact gcgaaagaag acatgggccc ctcagcaagc tttatggccg ggccccaccc
361 ccacctccag cccctgccag ctctcagaaa tgccatgtag tgaatgggca gggcccagct
421 tgtagggccc caggttccac gaaaacctcc tccagggaga agggccaggg gtcccggagc
481 cgtggccacc agcctcctga gaagacccag aaggacaacc tctgccagcc agggggcctc
541 accaaggact cccctggaaa acctcccatg gctccccctt ctaaagaacc tcctggcaga
601 gagaacatcg agatcatccc cagtgagggg tccagtcact gggctgaagg cagccctcct
661 gaaaaggagc ccagtgggac caggctgccc cctaaaaccc accggaagat ggctcggaag
721 gagtgcgacc tcaacaggca gtgtggggta ataaatccag agaccaaaaa gatctgtacc
781 cgcctgttga cctgcaagat ccactcagta caccagcgcc gggaagtcca gggccgggcc
841 aaggactttg acgtgctggt ggcagagctg aaggccaact cccgcaaagg ggagtctccc
901 aaggagaaga gcccagggcg caaggagcaa gttctcgagc gcccctccca ggagctcccc
961 tcctcagtcc aggttgtagc agcggtggct gctcccagca gcaccttctc tgttcgtgcc
1021 aagcagacct acccatactg tgcactgccc aggtcccggg cctcctccga gagtgaattg
1081 gatgatgaag gcccctgtgg tggtgatggg gacccaggcc tgttcccctt ccccatgccc
1141 cggggtggga cccaggcctc cagcgaagag agtgaggagg aggggacatc tgacgacctc
1201 cacccacccc ctgactgcca ttatgcaacc cggcccccac ggccacaggc gttctgcacc
1261 tttgggagcc ggctggtgag cccaggatgc tatgtgttta gccgccggct ggaccggttc
1321 tgctcagcac tcagctccat gctggaacgg cacctcagca cacacatgtg gaagaagatc
1381 ccaccggcag ctgaacctcc agttcacctt gtcaactccc cgttatctgc tcccctgagc
1441 ccatcctcta caggcacctg cccccgcctt ccaggtccaa ccctgagacc tgcctgccca
1501 gcctccatgc cccccaccaa ggacaacctt gtccccagct accctgcagg ctcccccagc
1561 gtggcggctg cctgtagcca ggcagagtgc atgggggagc caggctatca cctcaccact
1621 gcctgccaac acgccatccc cgtccttcag caagctgccg ccttccaagg ccagcaagtc
1681 atccaaaggc aaggacgggg tggaggtgga ggccccttct cgaaagcgga agttatcccc
1741 tggccctacc actcttaaac ggacctgcat cctggagccc actggaaaag ggaaaccctc
1801 tggctgtagg ggcctctcgg ccaaaactaa aacagccctg agcatggggc ttaatgggac
1861 aatggggcca agagtgaagc gggcagggcc cctggactgt cgtggctccc ctcatcagct
1921 ccccacacca gtcaaggctt ctcagctgga gaaccgggga gcagctggac acccagccaa
1981 ggccctgcca accaactgcc tctctgagga ggaggtggcc aagaagcgga aaaacctggc
2041 cacttattgc cggccagtga aggccaagca ctgtcaggct ggtgcccctg ctgatgtggc
2101 ctgctctgtg cgccgcaaga agccaggccc ggccctggcc tttgaggaga agtgctctac
2161 actgaagtca aaagcccatt aacgagaaag tgcctgccca ctgcaacgga gccgccagca
2221 cctcctcccc tccagatccg ggccccaggc tgctgccgct ttttataact ttatattatt
2281 tttttttaag aaaaaaagct ctttaaaata cctcaaaaaa aaaaaaaaaa aaaaaaaaaa
2341 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2401 aaaaaaaaaa
//