LOCUS BC036786 3810 bp mRNA linear HUM 07-OCT-2003 DEFINITION Homo sapiens cadherin 7, type 2, mRNA (cDNA clone MGC:45983 IMAGE:5744842), complete cds. ACCESSION BC036786 VERSION BC036786.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3810) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3810) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (23-AUG-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 79 Row: l Column: 23 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 16306488. FEATURES Location/Qualifiers source 1..3810 /db_xref="H-InvDB:HIT000051812" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:45983 IMAGE:5744842" /tissue_type="Brain, adult medulla" /clone_lib="NIH_MGC_119" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3810 /gene="CDH7" /gene_synonym="CDH7L1" /db_xref="GeneID:1005" /db_xref="MIM:605806" CDS 696..2588 /gene="CDH7" /gene_synonym="CDH7L1" /codon_start=1 /product="CDH7 protein" /protein_id="AAH36786.1" /db_xref="GeneID:1005" /db_xref="MIM:605806" /translation="MKLGKVEFCHFLQLIALFLCFSGMSQAELSRSRSKPYFQSGRSR TKRSWVWNQFFVLEEYMGSDPLYVGKLHSDVDKGDGSIKYILSGEGASSIFIIDENTG DIHATKRLDREEQAYYTLRAQALDRLTNEPVEPESEFVIKIQDINDNEPKFLDGPYTA GVPEMSPVGTSVVQVTATDADDPTYGNSARVVYSILQGQPYFSVEPKTGVIKTALPNM DREAKDQYLLVIQAKDMVGQNGGLSGTTSVTVTLTDVNDNPPRFPRRSYQYNVPESLP VASVVARIKAADADIGANAEMEYKIVDGDGLGIFKISVDKETQEGIITIQKELDFEAK TSYTLRIEAANKDADPRFLSLGPFSDTTTVKIIVEDVDEPPVFSSPLYPMEVSEATQV GNIIGTVAAHDPDSSNSPVRYSIDRNTDLERYFNIDANSGVITTAKSLDRETNAIHNI TVLAMESQNPSQVGRGYVAITILDINDNAPEFAMDYETTVCENAQPGQVIQKISAVDK DEPSNGHQFYFSLTTDATNNHNFSLKDNKDNTASILTRRNGFRRQEQSVYYLPIFIVD SGSPSLSSTSTLTIRVCDCDADGVAQTCNAEAYVLPAGLSTGALIAILACVLTLLGRY CFQGLL" misc_feature 912..1148 /gene="CDH7" /gene_synonym="CDH7L1" /note="CA; Region: Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium" /db_xref="CDD:smart00112" misc_feature 1167..1409 /gene="CDH7" /gene_synonym="CDH7L1" /note="cadherin; Region: Cadherin domain" /db_xref="CDD:pfam00028" misc_feature 1545..1820 /gene="CDH7" /gene_synonym="CDH7L1" /note="CA; Region: Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium" /db_xref="CDD:smart00112" misc_feature 1890..2135 /gene="CDH7" /gene_synonym="CDH7L1" /note="CA; Region: Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium" /db_xref="CDD:smart00112" misc_feature 2151..2444 /gene="CDH7" /gene_synonym="CDH7L1" /note="cadherin; Region: Cadherin domain" /db_xref="CDD:pfam00028" BASE COUNT 1044 a 904 c 877 g 985 t ORIGIN 1 ctgggaggcg ccgaagtctc agtggctccc tgggccggcc tccgacagcg ctgacagcag 61 gcgcccgccg cccaccatcg tcgccctctt cccctccctc ttcggccccg gctccggcgc 121 gctctctcct cctctcctgc gcgccctctc gccctctctc tggccgcgcg ctcccgctgg 181 ctccggaccc tgcgtctcag ctgcccgggc gagccggagg ggcccctcgc agtgagcaga 241 cgcagcgggc ccccggcgcc cgaggccggg gcagggtccc cgcgcaccgc ggagtgggct 301 gtgattggag gaggagcccg tgccgggcgg gcccgagcgg gtgtcgagcc ggttcctcca 361 gtctgccccg cgcgcggagc tgcgcgcact gggtccccaa gagcccgcgg gcgtccggca 421 gccgagcgca cgttctttcg gatgcacacg cccgggtccc tggcgtctga cgccgtgggg 481 agggcagcga ggccccaggt acttactaca ccattctttg gcgaaggcta ttcagcagtg 541 gtgacctctt ccaatccaac actctacaga ttattatctc tggactccca gctgacaccc 601 tgccggaggc aagagctact aagccaactg gaactgtgcc ttttctcttg tcaaggtttt 661 tttcttacac aggaaaaaga aagaaaaaaa aaaagatgaa gttgggcaaa gtggagttct 721 gccattttct gcagctaata gctcttttcc tgtgtttttc tgggatgagt caagcagaac 781 tctcaaggtc cagatcaaag ccctatttcc aatcagggag gtcccggacc aagcgcagct 841 gggtgtggaa tcagttcttt gtgctggagg aatacatggg ttcagacccc ctctatgtag 901 gaaagcttca ctctgatgtt gataaaggag atggttccat caaatacatc ttgtcaggcg 961 aaggggcaag ttccattttc attattgatg agaacactgg ggatattcat gccaccaaga 1021 gactggatcg tgaggagcag gcctactaca cgctccgagc tcaagcgctg gataggctca 1081 ccaacgaacc cgtggagccc gagtcggagt ttgtcatcaa aattcaggat atcaacgaca 1141 atgaacccaa atttttggat ggcccataca cggcaggagt tcccgaaatg tctcccgtgg 1201 ggacctcagt ggtacaagtg acagcgacgg atgctgatga tcctacatat ggcaacagtg 1261 ccagagtggt ctacagtatt ctgcaaggac agccgtactt ctcagtggag ccaaagacag 1321 gagtcatcaa gactgccctt ccaaacatgg atagagaggc taaagaccag tatttgcttg 1381 ttattcaggc aaaggatatg gttggtcaaa atggaggact gtcaggaact acatcagtca 1441 ctgtgaccct aactgatgtc aacgataatc cacctcgctt tcctcgaagg tcttatcaat 1501 ataacgtccc agagtcatta cctgtagcct cagttgtggc cagaattaaa gctgctgatg 1561 cagatattgg agctaatgct gaaatggagt acaagattgt ggatggtgat ggtttgggca 1621 tttttaagat ttctgttgac aaagaaaccc aggaaggaat cattactata cagaaggagc 1681 tggattttga agccaaaaca agttacacgc tacggataga agctgcaaat aaagatgccg 1741 accctcgctt tctgagcttg ggtccgttca gtgacacgac aactgtgaag ataattgtgg 1801 aagatgtaga tgagccccct gtgttctctt cacccttgta ccctatggag gtgtcggaag 1861 ctacccaggt tgggaatatc attggcactg tagcagctca tgacccagat tcttccaata 1921 gccctgtgag gtactcaatt gacagaaaca cagacttgga gagatacttc aatattgatg 1981 ccaacagtgg ggtcatcaca actgccaagt ctttggatcg agagacaaat gctattcaca 2041 atatcacagt ccttgcaatg gagagccaga atccatctca agtaggaaga ggctatgtgg 2101 ccatcactat acttgacatc aatgataacg cccctgaatt tgccatggac tatgagacca 2161 ccgtctgtga aaatgcccag ccggggcagg ttatccagaa aatcagtgct gtggataaag 2221 atgagccatc caatggacac cagttttact tcagcttaac aacggatgca acaaataacc 2281 acaacttttc attgaaagat aacaaagaca acacagcctc aatactgacc aggagaaacg 2341 gcttccggag acaggaacaa tcagtttact atctgccaat tttcattgtg gacagtggat 2401 ctccctcact tagcagcacc agcaccctca ccatccgcgt gtgtgactgt gatgctgacg 2461 gcgtagccca gacctgcaat gcagaggcct atgtcctacc tgctggcctc agtacaggag 2521 ccctgatagc catactcgcc tgtgtcttga cattattggg taggtactgt ttccagggct 2581 tgctctgaaa gagctgtcac aataaccaca tgtcacgact tgcctattat cttctccatt 2641 tggtgaacat atgcagatat tctactggat ggtgtttgtt ttgttttgtt tttctttgag 2701 acggggtctc actctgttgc ccaggctgga gtgcagtaga atgatctggg ctcactgcag 2761 cctctgcctc ccaggttcaa gcaattctcc cacctcagcc tcccgagtag ctgggattac 2821 aggggtgcac caccacaccc agctaacttt tgtatcttta gtagagactg agtttcacca 2881 tgttgggcag gctggtcttg aactcctgac ctcaggtgat ccacccacct tggcctccca 2941 aagtgctggg attacaggag tgagccacag ctcctggcct ggatggtgtt ttgctcacta 3001 agtaatacaa ttgttggcca cactttccag tggtatattt gaagtataac tcagacaaaa 3061 agttgtatca atttcatttt caaagcaaca gtgaagataa atggcttatg ctttaaatta 3121 atgcttttta ggattaaaaa taatctatct tatcccagtt ctttgcttta gagcactcta 3181 cagaggagat acactagact ggagaataca ttttctatat tgttttgaca atatgcttat 3241 tttagaaatt atggctttat attctacttt ttaaagaaat tatttgattg ctttcttaaa 3301 ttatttgcaa atttgaaatg attacaattt cagcaatgca aatcttatat ttttaaagta 3361 ttaaatacta acacatttaa ttgtacattt ccatgattag tttattactc ggttaaatta 3421 aatttataac tcatatttgc agtaactcag attttgcagc atccttttaa aaattgggag 3481 atgtccaatg tggacactgg gtaatgggtt tattccaaag aaacattttt cttcacattg 3541 taacttgtaa cacgaacaca acaagaacag agtaaacatt caatataccg ttccatatgg 3601 tgaatgttca ataaatttta agtgttactg atggaaaatt ataagctaag acctagttac 3661 taatacatta taaatgctgt cgtgaaaatg gaggttattg tcttaagtaa cttaagctaa 3721 acaagtaaat ctaaaagaaa ataaactata ttttgcatag aactttaaaa aaaaaaaaaa 3781 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa //