LOCUS BC036773 2200 bp mRNA linear HUM 09-JUN-2008 DEFINITION Homo sapiens opsin 3, mRNA (cDNA clone MGC:46103 IMAGE:5723543), complete cds. ACCESSION BC036773 VERSION BC036773.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2200) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2200) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (23-AUG-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Invitrogen cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 79 Row: g Column: 14. FEATURES Location/Qualifiers source 1..2200 /db_xref="H-InvDB:HIT000051805" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:46103 IMAGE:5723543" /tissue_type="Ovary, pooled from 3 adults" /clone_lib="NIH_MGC_125" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2200 /gene="OPN3" /db_xref="GeneID:23596" /db_xref="HGNC:HGNC:14007" /db_xref="MIM:606695" CDS 98..1306 /gene="OPN3" /codon_start=1 /product="opsin 3" /protein_id="AAH36773.1" /db_xref="GeneID:23596" /db_xref="HGNC:HGNC:14007" /db_xref="MIM:606695" /translation="MYSGNRSGGHGYWDGGGAAGAEGPAPAGTLSPAPLFSPGTYERL ALLLGSIGLLGVGNNLLVLVLYYKFQRLRTPTHLLLVNISLSDLLVSLFGVTFTFVSC LRNGWVWDTVGCVWDGFSGSLFGIVSIATLTVLAYERYIRVVHARVINFSWAWRAITY IWLYSLAWAGAPLLGWNRYILDVHGLGCTVDWKSKDANDSSFVLFLFLGCLVVPLGVI AHCYGHILYSIRMLRCVEDLQTIQVIKILKYEKKLAKMCFLMIFTFLVCWMPYIVICF LVVNGHGHLVTPTISIVSYLFAKSNTVYNPVIYVFMIRKFRRSLLQLLCLRLLRCQRP AKDLPAAGSEMQIRPIVMSQKDGDRPKKKVTFNSSSIIFIITSDESLSVDDSDKTNGS KVDVIQVRPL" BASE COUNT 589 a 531 c 491 g 589 t ORIGIN 1 caggcggcgg agccccaacc ccacccagtg cggagcgcgc cgcgagcccc gccgcaagct 61 gagcgcctcc gcccgccagg cgcgccggcg ccgggccatg tactcgggga accgcagcgg 121 cggccacggc tactgggacg gcggcggggc cgcgggcgct gaggggccgg cgccggcggg 181 gacactgagc cccgcgcccc tcttcagccc cggcacctac gagcgcctgg cgctgctgct 241 gggctccatt gggctgctgg gcgtcggcaa caacctgctg gtgctcgtcc tctactacaa 301 gttccagcgg ctccgcactc ccactcacct cctcctggtc aacatcagcc tcagcgacct 361 gctggtgtcc ctcttcgggg tcacctttac cttcgtgtcc tgcctgagga acggctgggt 421 gtgggacacc gtgggctgcg tgtgggacgg gtttagcggc agcctcttcg ggattgtttc 481 cattgccacc ctaaccgtgc tggcctatga acgttacatt cgcgtggtcc atgccagagt 541 gatcaatttt tcctgggcct ggagggccat tacctacatc tggctctact cactggcgtg 601 ggcaggagca cctctcctgg gatggaacag gtacatcctg gacgtacacg gactaggctg 661 cactgtggac tggaaatcca aggatgccaa cgattcctcc tttgtgcttt tcttatttct 721 tggctgcctg gtggtgcccc tgggtgtcat agcccattgc tatggccata ttctatattc 781 cattcgaatg cttcgttgtg tggaagatct tcagacaatt caagtgatca agattttaaa 841 atatgaaaag aaactggcca aaatgtgctt tttaatgata ttcaccttcc tggtctgttg 901 gatgccttat atcgtgatct gcttcttggt ggttaatggt catggtcacc tggtcactcc 961 aacaatatct attgtttcgt acctctttgc taaatcgaac actgtataca atccagtgat 1021 ttatgtcttc atgatcagaa agtttcgaag atcccttttg cagcttctgt gcctccgact 1081 gctgaggtgc cagaggcctg ctaaagacct accagcagct ggaagtgaaa tgcagatcag 1141 acccattgtg atgtcacaga aagatgggga caggccaaag aaaaaagtga ctttcaactc 1201 ttcttccatc atttttatca tcaccagtga tgaatcactg tcagttgacg acagcgacaa 1261 aaccaatggg tccaaagttg atgtaatcca agttcgtcct ttgtaggaat gaagaatggc 1321 aacgaaagat ggggccttaa attggatgcc acttttggac tttcatcata agaagtgtct 1381 ggaatacccg ttctatgtaa tatcaacaga accttgtggt ccagcaggaa atccgaattg 1441 cccatatgct cttgggcctc aggaagaggt tgaacaaaaa caaattcttt taattcaacg 1501 ggtgctttac ataatgaaaa aaccacttgt ggcacacgat gggcatctaa catcatcatc 1561 ttctaatgtg ttggagattt tcatttcaaa tatatttttt aaattactct attttccaaa 1621 acacgttaat gcatttttct cgaaaatacc ttactgtaaa aataactgtc gcgtacacat 1681 gtgtgaagta gctagaacat actgaatttt ttttgtactg ttggactcta ttcagtgtca 1741 tgtcctatat ctgatcaagt tatcaaggag ataattctag aatgaaaaag aaaatcctct 1801 tgttggaaac aaaagacgtt ttatatgtgc agtatgacaa agaggagttt cagagacaac 1861 tttgaatcct tgtcagcctg gagaccagca ccagaggaat ctacaaggca aactcccata 1921 tatttgcttc ccccaaattg ctgcccctac agactcaaag ctctttttct ttgttttgtt 1981 gtttctctaa aaatttactg ttctttgtcg atgctatata agccagggag ttctaagacg 2041 ccagctcttt gagatttgct cattcccctg tatttcccac atatatatta catatacccg 2101 ctaataaatt tatgtttgtt ttaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2161 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa //