LOCUS BC036713 1891 bp mRNA linear HUM 06-OCT-2005
DEFINITION Homo sapiens ATG16 autophagy related 16-like 2 (S. cerevisiae),
mRNA (cDNA clone IMAGE:4842296), partial cds.
ACCESSION BC036713
VERSION BC036713.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1891)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1891)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-AUG-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC036713.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 33 Row: n Column: 11.
FEATURES Location/Qualifiers
source 1..1891
/db_xref="H-InvDB:HIT000094580"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4842296"
/tissue_type="Eye, normal, pigmented retinal epithelium"
/clone_lib="NIH_MGC_43"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1891
/gene="ATG16L2"
/gene_synonym="FLJ00012"
/gene_synonym="WDR80"
/db_xref="GeneID:89849"
/db_xref="HGNC:HGNC:25464"
/db_xref="IMGT/GENE-DB:25464"
/db_xref="MIM:25464"
CDS <1..1629
/gene="ATG16L2"
/gene_synonym="FLJ00012"
/gene_synonym="WDR80"
/codon_start=1
/product="ATG16L2 protein"
/protein_id="AAH36713.1"
/db_xref="GeneID:89849"
/db_xref="HGNC:HGNC:25464"
/db_xref="IMGT/GENE-DB:25464"
/db_xref="MIM:25464"
/translation="LDSDQVPSLVALRVKWQEEEEGLRLVCGEMAYQVVEKGAALGTL
ESELQQRQSRLAALEARVAQLREARAQQAQQVEEWRAQNAVQRAAYEALRAHVGLREA
ALRRLQEEARDLLERLVQRKARAAAERNLRNERRERAKQARVSQELKKAAKRTVSISE
GPDTLGDGMRERRETLALVPEPEPLEKEACEKWKRPFRSASATSLTLSHCVDVVKGLL
DFKKRRGHSIGGAPEQRYQIIPVCVAARLPTRAQDVLDAHLSEVNAVRFGPNSSLLAT
GGADRLIHLWNVVGSRLEANQTLEGAGGSITSVDFDPSGYQVLAATYNQAAQLWKVGE
AQSKETLSGHKDKVTAAKFKLTRHQAVTGSRDRTVKEWDLGRAYCSRTINVLSYCNDV
VCGDHIIISGHNDQKIRFWDSRGPHCTQVIPVQGRVTSLSLSHDQLHLLSCSRDNTLK
VIDLRVSNIRQVFRADGFKCGSDWTKAVFSPDRSYALAGSCDGALYIWDVDTGKLESR
LQGPHCAAVNAVAWCYSGSHMVSVDQGRKVVLWQ"
BASE COUNT 401 a 510 c 638 g 342 t
ORIGIN
1 cttgactcag accaagtccc atcactggtc gcactgaggg tgaagtggca ggaggaggag
61 gaggggctcc ggctggtctg tggtgagatg gcctaccagg tggtggagaa gggcgcggcc
121 ctgggcacgc tggagtcgga gctgcagcag aggcaaagca ggctggcagc cctggaggcc
181 cgcgtggcgc agctgcgaga ggcgcgggcg cagcaggccc agcaggtgga ggagtggcgg
241 gcgcagaatg cggtgcagcg ggcagcctac gaggcgctgc gcgcgcacgt cgggctccgg
301 gaggcggcac tgcgcaggct ccaggaagag gcgcgcgacc tgctggagag gctcgtgcag
361 cgcaaggcgc gcgccgcggc cgagcgcaac ctgcgcaacg agcgccggga gcgggccaag
421 caggcgcggg tgtcccagga gctgaagaag gctgccaagc ggaccgtgag catcagcgag
481 ggcccggaca ccctaggcga tgggatgagg gagagaaggg agactctggc tctggtccct
541 gagccagagc ccctggagaa ggaagcttgt gagaagtgga agaggccctt caggtctgcc
601 tcagccacct ccctgacgct gtcccactgt gtggatgtgg tgaaggggct tctggatttt
661 aagaagagga gaggtcactc aattggggga gcccctgagc agcgatacca gatcatccct
721 gtgtgtgtgg ctgcccgact tcctacccgg gctcaggatg tgctggatgc ccacctctct
781 gaggtcaatg ctgttcgttt tggccccaac agcagcctcc tggccactgg aggggctgac
841 cgcctgatcc acctctggaa tgttgtggga agtcgcctgg aggccaacca gaccctggag
901 ggagctggtg gcagcatcac cagtgtggac tttgacccct cgggctacca ggttttagca
961 gcaacttaca accaggctgc ccagctctgg aaggtggggg aggcacagtc caaggagaca
1021 ctgtctggac acaaggataa ggtgacagct gccaaattca agctaacgag gcaccaggca
1081 gtgactggga gccgcgaccg gacagtgaag gagtgggacc tcggccgtgc ctattgctcc
1141 aggaccatca atgtcctttc ctactgtaat gacgtggtgt gtggggacca tatcatcatt
1201 agtggccaca atgaccagaa gatccggttc tgggacagca gggggcccca ctgcacccag
1261 gtcatccctg tgcagggccg ggtcacctcc ctgagcctca gccacgacca actgcacctg
1321 ctcagctgtt cccgagacaa cacactcaag gtcatcgacc tgcgtgtcag caacatccgc
1381 caggtgttca gggccgatgg cttcaagtgt ggttctgact ggaccaaagc tgtgttcagc
1441 ccggacagaa gctatgcact ggcaggctcc tgtgatgggg ccctttacat ctgggatgtg
1501 gacaccggga aactggagag cagactacag ggaccccatt gcgctgccgt caacgccgtg
1561 gcctggtgct actccgggag ccacatggtg agcgtggacc agggcaggaa ggttgtgctc
1621 tggcagtagg gccacgacct gcctgcctgg gctggagctc ttgcccgaag cctgaagctt
1681 ccttcggcgc catgcagggg ttggggttgg gactcgagct ggccttggga tttaatgggg
1741 aagaaggcct ggcaggacct ggcctgtttg tttaaaaatg aagtatgggt tgggggatta
1801 cgctagtttt tctttgtatt tttatctcta tctatctcct cactttttct cccaaagtag
1861 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//