LOCUS BC036569 2988 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens contactin 1, mRNA (cDNA clone MGC:41894
IMAGE:5273941), complete cds.
ACCESSION BC036569
VERSION BC036569.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2988)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2988)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-AUG-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC036569.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 75 Row: f Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 28373116.
FEATURES Location/Qualifiers
source 1..2988
/db_xref="H-InvDB:HIT000051746"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:41894 IMAGE:5273941"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2988
/gene="CNTN1"
/gene_synonym="F3"
/gene_synonym="GP135"
/db_xref="GeneID:1272"
/db_xref="MIM:600016"
CDS 167..2050
/gene="CNTN1"
/gene_synonym="F3"
/gene_synonym="GP135"
/codon_start=1
/product="CNTN1 protein"
/protein_id="AAH36569.1"
/db_xref="GeneID:1272"
/db_xref="MIM:600016"
/translation="MKMWLLVSHLVIISITTCLAEFTWYRRYGHGVSEEDKGFGPIFE
EQPINTIYPEESLEGKVSLNCRARASPFPVYKWRMNNGDVDLTSDRYSMVGGNLVINN
PDKQKDAGIYYCLASNNYGMVRSTEATLSFGYLDPFPPEERPEVRVKEGKGMVLLCDP
PYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSI
TKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWR
KVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQAFPEWV
EHINDTEVDIGSDLYWPCVATGKPIPTIRWLKNGYAYHKGELRLYDVTFENAGMYQCI
AENTYGAIYANAELKILALAPTFEMNPMKKKILAAKGGRVIIECKPKAAPKPKFSWSK
GTEWLVNSSRILIWEDGSLEINNITRNDGGIYTCFAENNRGKANSTGTLVITDPTRII
LAPINADITVGENATMQCAASFDPALDLTFVWSFNGYVIDFNKENIHYQRNFMLDSNG
ELLIRNAQLKHAGRYTCTAQTIVDNSSASADLVVRGKNRKGGEKNMVDSFLPVCASLP
PTW"
BASE COUNT 947 a 544 c 619 g 878 t
ORIGIN
1 gtattgtggt ataactgttg ctgtatttat tcaaatggac aatttgcaat agatattata
61 cccaggacga cagataagtc aacacataag gtgtttaaaa ttatccaact gccatagagc
121 taaattcttt tttggaaaat tgaaccgaac ttctactgaa tacaagatga aaatgtggtt
181 gctggtcagt catcttgtga taatatctat tactacctgt ttagcagagt ttacatggta
241 tagaagatat ggtcatggag tttctgagga agacaaagga tttggaccaa tttttgaaga
301 gcagccaatc aataccattt atccagagga atcactggaa ggaaaagtct cactcaactg
361 tagggcacga gccagccctt tcccggttta caaatggaga atgaataatg gggacgttga
421 tctcacaagt gatcgataca gtatggtagg aggaaacctt gttatcaaca accctgacaa
481 acagaaagat gctggaatat actactgttt agcatctaat aactacggga tggtcagaag
541 cactgaagca accctgagct ttggatatct tgatcctttc ccacctgagg aacgtcctga
601 ggtcagagta aaagaaggga aaggaatggt gcttctctgt gaccccccat accattttcc
661 agatgatctt agctatcgct ggcttctaaa tgaatttcct gtatttatca caatggataa
721 acggcgattt gtgtctcaga caaatggcaa tctctacatt gcaaatgttg aggcttccga
781 caaaggcaat tattcctgct ttgtttccag tccttctatt acaaagagcg tgttcagcaa
841 attcatccca ctcattccaa tacctgaacg aacaacaaaa ccatatcctg ctgatattgt
901 agttcagttc aaggatgtat atgcattgat gggccaaaat gtgaccttag aatgttttgc
961 acttggaaat cctgttccgg atatccgatg gcggaaggtt ctagaaccaa tgccaagcac
1021 tgctgagatt agcacctctg gggctgttct taagatcttc aatattcagc tagaagatga
1081 aggcatctat gaatgtgagg ctgagaacat tagaggaaag gataaacatc aagcaagaat
1141 ttatgttcaa gcattccctg agtgggtaga acacatcaat gacacagagg tggacatagg
1201 cagtgatctc tactggcctt gtgtggccac aggaaagccc atccctacaa tccgatggtt
1261 gaaaaatgga tatgcgtatc ataaagggga attaagactg tatgatgtga cttttgaaaa
1321 tgccggaatg tatcagtgca tagctgaaaa cacatatgga gccatttatg caaatgctga
1381 gttgaagatc ttggcgttgg ctccaacttt tgaaatgaat cctatgaaga aaaagatcct
1441 ggctgctaaa ggtggaaggg tgataattga atgcaaacct aaagctgcac cgaaaccaaa
1501 gttttcatgg agtaaaggga cagagtggct tgtcaatagc agcagaatac tcatttggga
1561 agatggtagc ttggaaatca acaacattac aaggaatgat ggaggtatct atacatgctt
1621 tgcagaaaat aacagaggga aagctaatag cactggaacc cttgttatca cagatcctac
1681 gcgaattata ttggccccaa ttaatgccga tatcacagtt ggagaaaacg ccaccatgca
1741 gtgtgctgcg tcctttgatc ctgccttgga tctcacattt gtttggtcct tcaatggcta
1801 tgtgatcgat tttaacaaag agaatattca ctaccagagg aattttatgc tggattccaa
1861 tggggaatta ctaatccgaa atgcgcagct gaaacatgct ggaagataca catgcactgc
1921 ccagacaatt gtggacaatt cttcagcttc agctgacctt gtagtgagag gtaaaaacag
1981 aaaaggtgga gagaaaaaca tggtggattc ctttctcccc gtctgtgcaa gcctgcctcc
2041 aacctggtga tcgttgacac tcaccatttc tgtgaaagac tttttttttt tttaacatat
2101 tatactagat ttgactaact caatcttgta gcttctgcag ttctccccac ccccaaccta
2161 gttcttagag tatgtttccc cttttgaaac atgtaaacat actttgggca taaatatttt
2221 ttaaaatata actataatgc ttcactaata ccttaaaaat gcctagtgaa ctaactcagt
2281 acattatata atggccaagt gaaagttttg tgttttcatg tcctgttttt ctttgaaatt
2341 atatagccca gaaattagct cattatctga aaaacgtatg aagaactgat gaattgtata
2401 atacaggagt attgccattg aatgtactgt ttgatttatt caagcaggta atgaacaatg
2461 ttgtcaaact ctctaatgag acatcataat taggacataa gctaaaaggg gcattactcc
2521 ggcagtcttt ttttcttaat cctagtacca tacatattct ttggcatgaa agaatgaaaa
2581 gcattagtaa acaactgaag tcctaccatg gctgtgtagg gtttttggaa caattcctgg
2641 aattggaaag tgaaaatgga tagcatgtgg gggaaaccct catctgagta gcaagatttt
2701 agtaaagatg actaagccat taacagcatg cattcatatt taattttatt gactcctgcc
2761 atcagctttt gtagatcgtt tgggtggaag gttgtgattt ttactgggag gacttgagta
2821 gaagtggatg attaaaattg aggagtatat aattctttct gggactgctt aaatgttatt
2881 gtttgaaaat accttcactt tccccctttg gtcaaagaga tgtgcttaaa attcttattc
2941 cttcacaata aataattttg attttcttag acaaaaaaaa aaaaaaaa
//