LOCUS BC036533 3987 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens junctophilin 3, mRNA (cDNA clone MGC:33713 IMAGE:5264853), complete cds. ACCESSION BC036533 VERSION BC036533.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3987) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3987) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (16-AUG-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 25, 2003 this sequence version replaced BC036533.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 47 Row: i Column: 11 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 21704282. FEATURES Location/Qualifiers source 1..3987 /db_xref="H-InvDB:HIT000051734" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:33713 IMAGE:5264853" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3987 /gene="JPH3" /gene_synonym="CAGL237" /gene_synonym="HDL2" /gene_synonym="JP-3" /gene_synonym="JP3" /db_xref="GeneID:57338" /db_xref="HGNC:HGNC:14203" /db_xref="MIM:605268" CDS 243..2489 /gene="JPH3" /gene_synonym="CAGL237" /gene_synonym="HDL2" /gene_synonym="JP-3" /gene_synonym="JP3" /codon_start=1 /product="junctophilin 3" /protein_id="AAH36533.1" /db_xref="GeneID:57338" /db_xref="HGNC:HGNC:14203" /db_xref="MIM:605268" /translation="MSSGGRFNFDDGGSYCGGWEDGKAHGHGVCTGPKGQGEYTGSWS HGFEVLGVYTWPSGNTYQGTWAQGKRHGIGLESKGKWVYKGEWTHGFKGRYGVRECAG NGAKYEGTWSNGLQDGYGTETYSDGGTYQGQWVGGMRQGYGVRQSVPYGMAAVIRSPL RTSINSLRSEHTNGTALHPDASPAVAGSPAVSRGGFVLVAHSDSEILKSKKKGLFRRS LLSGLKLRKSESKSSLASQRSKQSSFRSEAGMSTVSSTASDIHSTISLGEAEAELAVI EDDIDATTTETYVGEWKNDKRSGFGVSQRSDGLKYEGEWASNRRHGYGCMTFPDGTKE EGKYKQNILVGGKRKNLIPLRASKIREKVDRAVEAAERAATTAKQKAEIAASRTSHSR AKAEAALTAAQKAQEEARIARITAKEFSPSFQHRENGLEYQRPKRQTSCDDIEVLSTG TPLQQESPELYRKGTTPSDLTTDDSPLQSFPTSPAATPPPAPAARNKVAHFSRQVSVD EERGGDIQMLLEGRAGDCARSSWGEEQAGGSRGVRSGALRGGLLVDDFRTRGSGRKQP GNPKPRERRTESPPVFTWTSHHRASNHSPGGSRLLELQEEKLSNYRMEMKPLLRMETH PQKRRYSKGGACRGLGDDHRLEDRGFGVQRLRSKAQNKENFRPASSAEPAVQKLASLR LGGAEPRLLRWDLTFSPPQKSLPVALESDEENGDELKSSTGSAPILVVMVILLNIGVA ILFINFFI" BASE COUNT 812 a 1248 c 1258 g 669 t ORIGIN 1 agcgcgagac gctggtcagg ctccgcggcg cagctcgaaa aggaataatc gcccccgatt 61 gactgaaatt cctccggagc cggcgccgcg gccgcccgcg cccgagaccg cgctccgggg 121 ccgcgtcctc ctctcctccg gaaaacgctc gcgacccagg gccgccggcg gccgcgactc 181 tgctgtgtcg atcgcctgag tccgttttca ccgtttgcgg gatctggaac cgagttacat 241 gcatgtccag tgggggcagg tttaattttg acgacggagg gtcctactgt ggaggctggg 301 aggacggcaa ggcgcacggc catggcgtct gcaccggccc caagggccaa ggcgaataca 361 ccggctcgtg gagccacggc ttcgaggtgc tgggcgtcta cacctggccc agcggcaaca 421 cgtaccaggg cacctgggcg cagggcaagc gccacggcat cggcctggag agcaagggga 481 agtgggtgta caagggcgag tggacgcacg gattcaaggg gcgctacggg gtgcgggagt 541 gcgcgggcaa cggggccaaa tacgaaggga cctggagcaa cgggctgcag gacggctacg 601 ggaccgagac ctactcggac ggagggacct accagggcca gtgggtcggt ggcatgcgcc 661 agggctacgg cgtccggcag agcgtcccgt atggcatggc cgcggtcatc cgctcacccc 721 tgaggacgtc catcaactcc ctgcgcagcg agcacaccaa cggcacggcg ctgcatcccg 781 acgcctctcc ggcggtggcc ggcagcccgg ccgtgtcccg cgggggcttc gtgctcgtgg 841 cccacagtga ctccgagatc ctcaagagca agaagaaggg gctgtttcgg cgctcgctgc 901 tgagtgggct gaagctgcgc aagtcggagt ccaagagcag cctggccagc caacgcagca 961 agcagagctc ctttcgcagc gaggcgggca tgagcaccgt cagctccacg gccagcgaca 1021 tccactccac catcagcctg ggcgaggctg aggccgagct ggcggtcatc gaggacgaca 1081 tcgacgccac caccaccgag acctacgtgg gcgagtggaa gaacgacaaa cgctccggct 1141 tcggcgtgag ccagcgctcg gacgggctca agtacgaggg cgagtgggcc agcaaccggc 1201 gccatggcta cggctgcatg accttcccgg acggcaccaa ggaggagggc aagtacaagc 1261 agaacatcct cgtcggcggc aagcgcaaga acctcatccc cctgcgggcc agcaagatcc 1321 gcgagaaggt ggaccgcgcc gttgaggccg ctgagcgggc cgccaccacc gccaagcaga 1381 aggctgagat cgcggcttcc aggacctccc actctcgggc aaaggccgag gcagccctca 1441 cagcagctca gaaagcccag gaggaggcgc ggatcgccag gatcactgcc aaagagttct 1501 ccccttcctt ccagcaccgg gaaaacgggc tggagtacca gaggccgaag cgtcagacct 1561 cctgtgacga catcgaggtg ctgtccaccg ggacacccct gcagcaggag agccccgagc 1621 tgtaccgcaa gggcaccact ccctccgacc tgaccaccga cgacagcccc ctgcagagct 1681 tccccaccag ccccgcggcc accccgccgc ccgcgcccgc cgccaggaac aaggtcgccc 1741 acttctcgag gcaggtgtcg gtggacgagg agcggggcgg ggacatccag atgctcctgg 1801 agggccgggc cggggactgc gcccgcagca gctggggcga ggagcaggcc gggggctcca 1861 ggggtgtccg cagcggtgcc ctgcgcggcg gcctgctcgt ggatgacttc cgcacccgag 1921 gttcgggccg caagcagccc gggaacccca agccgcggga gcggcggacg gagtcacccc 1981 ccgtgttcac gtggacttcc caccaccggg ccagcaacca cagccccgga ggctccaggc 2041 tgctggagct gcaggaggag aagctgagca actaccggat ggagatgaaa cccttgctga 2101 ggatggagac gcatccccag aaaagacgct acagcaaggg cggcgcctgc cggggcttgg 2161 gggacgacca ccgcctcgag gaccggggct tcggggtgca gagactgcgg tccaaggccc 2221 agaacaagga gaacttcagg ccggcctcct ccgcggagcc cgccgtgcag aaactggcga 2281 gcctgcggct gggcggggcc gagccccggt tgctgcgttg ggacttgacc ttctccccgc 2341 cccagaaatc cttgcctgtc gctctagagt ccgacgagga gaatggggat gagctcaagt 2401 ccagtacggg ctcagcgcct atcctggtgg tcatggtgat cttgctcaac atcggagtcg 2461 ccattctgtt tattaacttt ttcatctgat gagatgtcgc ggtagcaaaa atagagaaag 2521 ggtagaaaaa agggacatta aaattaaaag caaaaccaca agaagggaaa gaccgcaact 2581 cggacagccc agcgacttcc aagtcctctc acagaagaac cacacgattg ggtatcactc 2641 acagtttgcc tttttttctg ggtaatgttt tttggatttt agccaaaatt ctttgcttgt 2701 ataacactct gctgtgtggc atggcagaag gaggccagca cgcagcccct ccagctccac 2761 gtggagacag aagggatccc ggcacatcag tggtaacagc ggacgttgtc atcgtggtca 2821 cacgtcccgt cttgggtgtg gatggagggc agcccggggc agagcctcag ccccgcggcc 2881 cctgagtggc agggctgact cccgtcgaca cgagcttaga aagtggattc actgctttct 2941 ctgtctagaa cagacgggtg acaagtatgg gcaggaggca tggggcaggg tggcccaccc 3001 cagtgggcag tagcctggcc tttttctgtg tgagatctgt gctgcacacc tgagggaggg 3061 ggagggatcg gccacctcct ccctgtgaga cggatgcagg tacttccctc ttctcggcac 3121 tgcccccggc cttccatgag aagccgactc cccacaccga gttttaaagc aaagcccttt 3181 tcttctgctg cccactcact gtgggtccca ttcggctgtt tcccccacca gaccccaggg 3241 aagccggggc ccactccgat ccgcctgggc tcagctaagc acggaagcca agggggctgt 3301 gccgtggagc tgggctcgcg ccggggctct gggtgtgtgc gcttggcgtg cagggtggac 3361 gcgtggggtt ccgtgtcccc agcagtgagg gccctagagg acgccttctc ccatggttac 3421 tgatctccac gggttttcac atctctgtac tgtgcctgcc tcaacttccc ctaacagata 3481 tgcatattcc ttccagatgc ctcagtgcta caccacagtg ggcctggtcc caggacagga 3541 atgcggttca aacccagtgg cttgaaactt cctgagaaac tgtagcatat ccagccccct 3601 aaaatgtaca atgtaacttg ttcagtccaa caaaaacagg ttccttatgt ttctgccttc 3661 tccaccaggg tcgctccatc acccaaacaa aagaacaagg tttgccagga tgtccgagtg 3721 ccccctggcc ctggctctcg tgtgcatgga cgtgcctgag gggtccgggc acggccatac 3781 gcaggacccc tgtgcccggg gaggcgctgc agggattccc catccggtcg tcttggggcc 3841 agcccgtctt atggactctg ccttgctttg cttatgttta gctgtttctc tgctaccttt 3901 cgagcagact tctttactac actgcactgg attgctatat ttttaaccag aaataaacta 3961 aagattagag caaaaaaaaa aaaaaaa //