LOCUS BC036531 4752 bp mRNA linear HUM 21-JUL-2006
DEFINITION Homo sapiens collagen, type I, alpha 1, mRNA (cDNA clone MGC:33668
IMAGE:5264710), complete cds.
ACCESSION BC036531
VERSION BC036531.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4752)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4752)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-AUG-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC036531.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: i Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14719826.
FEATURES Location/Qualifiers
source 1..4752
/db_xref="H-InvDB:HIT000051732"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33668 IMAGE:5264710"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4752
/gene="COL1A1"
/gene_synonym="OI4"
/db_xref="GeneID:1277"
/db_xref="HGNC:HGNC:2197"
/db_xref="MIM:120150"
CDS 117..4511
/gene="COL1A1"
/gene_synonym="OI4"
/codon_start=1
/product="collagen, type I, alpha 1"
/protein_id="AAH36531.1"
/db_xref="GeneID:1277"
/db_xref="HGNC:HGNC:2197"
/db_xref="MIM:120150"
/translation="MFSFVDLRLLLLLAATALLTHGQEEGQVEGQDEDIPPITCVQNG
LRYHDRDVWKPEPCRICVCDNGKVLCDDVICDETKNCPGAEVPEGECCPVCPDGSESP
TDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFA
PQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMG
PRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGA
KGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPP
GPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADG
QPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGE
PGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPA
GERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPG
PPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGP
AGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFP
GERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPG
PKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGA
PGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNV
GAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETG
PAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGF
PGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSP
GAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAG
PQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGS
AGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQP
PQEKAHDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDL
KMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVAQKNWYISKNPKD
KRHVWFGESMTDGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMD
QQTGNLKKALLLQGSNEIEIRAEGNSRFTYSVTVDGCTSHTGAWGKTVIEYKTTKTSR
LRIIDVAPLDVGAPDQEFGFDVGHVCFL"
BASE COUNT 821 a 1544 c 1485 g 902 t
ORIGIN
1 agacgggagt ttctcctcgg ggtcggagca ggaggcacgc ggagtgtgag gccacgcatg
61 agcggacgct aaccccctcc ccagccacaa agagtctaca tgtctagggt ctagacatgt
121 tcagctttgt ggacctccgg ctcctgctcc tcttagcggc caccgccctc ctgacgcacg
181 gccaagagga aggccaagtc gagggccaag acgaagacat cccaccaatc acctgcgtac
241 agaacggcct caggtaccat gaccgagacg tgtggaaacc cgagccctgc cggatctgcg
301 tctgcgacaa cggcaaggtg ttgtgcgatg acgtgatctg tgacgagacc aagaactgcc
361 ccggcgccga agtccccgag ggcgagtgct gtcccgtctg ccccgacggc tcagagtcac
421 ccaccgacca agaaaccacc ggcgtcgagg gacccaaggg agacactggc ccccgaggcc
481 caaggggacc cgcaggcccc cctggccgag atggcatccc tggacagcct ggacttcccg
541 gaccccccgg accccccgga cctcccggac cccctggcct cggaggaaac tttgctcccc
601 agctgtctta tggctatgat gagaaatcaa ccggaggaat ttccgtgcct ggccccatgg
661 gtccctctgg tcctcgtggt ctccctggcc cccctggtgc acctggtccc caaggcttcc
721 aaggtccccc tggtgagcct ggcgagcctg gagcttcagg tcccatgggt ccccgaggtc
781 ccccaggtcc ccctggaaag aatggagatg atggggaagc tggaaaacct ggtcgtcctg
841 gtgagcgtgg gcctcctggg cctcagggtg ctcgaggatt gcccggaaca gctggcctcc
901 ctggaatgaa gggacacaga ggtttcagtg gtttggatgg tgccaaggga gatgctggtc
961 ctgctggtcc taagggtgag cctggcagcc ctggtgaaaa tggagctcct ggtcagatgg
1021 gcccccgtgg cctgcctggt gagagaggtc gccctggagc ccctggccct gctggtgctc
1081 gtggaaatga tggtgctact ggtgctgccg ggccccctgg tcccaccggc cccgctggtc
1141 ctcctggctt ccctggtgct gttggtgcta agggtgaagc tggtccccaa gggccccgag
1201 gctctgaagg tccccagggt gtgcgtggtg agcctggccc ccctggccct gctggtgctg
1261 ctggccctgc tggaaaccct ggtgctgatg gacagcctgg tgctaaaggt gccaatggtg
1321 ctcctggtat tgctggtgct cctggcttcc ctggtgcccg aggcccctct ggaccccagg
1381 gccccggcgg ccctcctggt cccaagggta acagcggtga acctggtgct cctggcagca
1441 aaggagacac tggtgctaag ggagagcctg gccctgttgg tgttcaagga ccccctggcc
1501 ctgctggaga ggaaggaaag cgaggagctc gaggtgaacc cggacccact ggcctgcccg
1561 gaccccctgg cgagcgtggt ggacctggta gccgtggttt ccctggcgca gatggtgttg
1621 ctggtcccaa gggtcccgct ggtgaacgtg gttctcctgg ccctgctggc cccaaaggat
1681 ctcctggtga agctggtcgt cccggtgaag ctggtctgcc tggtgccaag ggtctgactg
1741 gaagccctgg cagccctggt cctgatggca aaactggccc ccctggtccc gccggtcaag
1801 atggtcgccc cggaccccca ggcccacctg gtgcccgtgg tcaggctggt gtgatgggat
1861 tccctggacc taaaggtgct gctggagagc ccggcaaggc tggagagcga ggtgttcccg
1921 gaccccctgg cgctgtcggt cctgctggca aagatggaga ggctggagct cagggacccc
1981 ctggccctgc tggtcccgct ggcgagagag gtgaacaagg ccctgctggc tcccccggat
2041 tccagggtct ccctggtcct gctggtcctc caggtgaagc aggcaaacct ggtgaacagg
2101 gtgttcctgg agaccttggc gcccctggcc cctctggagc aagaggcgag agaggtttcc
2161 ctggcgagcg tggtgtgcaa ggtccccctg gtcctgctgg tccccgaggg gccaacggtg
2221 ctcccggcaa cgatggtgct aagggtgatg ctggtgcccc tggagctccc ggtagccagg
2281 gcgcccctgg ccttcaggga atgcctggtg aacgtggtgc agctggtctt ccagggccta
2341 agggtgacag aggtgatgct ggtcccaaag gtgctgatgg ctctcctggc aaagatggcg
2401 tccgtggtct gaccggcccc attggtcctc ctggccctgc tggtgcccct ggtgacaagg
2461 gtgaaagtgg tcccagcggc cctgctggtc ccactggagc tcgtggtgcc cccggagacc
2521 gtggtgagcc tggtcccccc ggccctgctg gctttgctgg cccccctggt gctgacggcc
2581 aacctggtgc taaaggcgaa cctggtgatg ctggtgctaa aggcgatgct ggtccccctg
2641 gccctgccgg acccgctgga ccccctggcc ccattggtaa tgttggtgct cctggagcca
2701 aaggtgctcg cggcagcgct ggtccccctg gtgctactgg tttccctggt gctgctggcc
2761 gagtcggtcc tcctggcccc tctggaaatg ctggaccccc tggccctcct ggtcctgctg
2821 gcaaagaagg cggcaaaggt ccccgtggtg agactggccc tgctggacgt cctggtgaag
2881 ttggtccccc tggtccccct ggccctgctg gcgagaaagg atcccctggt gctgatggtc
2941 ctgctggtgc tcctggtact cccgggcctc aaggtattgc tggacagcgt ggtgtggtcg
3001 gcctgcctgg tcagagagga gagagaggct tccctggtct tcctggcccc tctggtgaac
3061 ctggcaaaca aggtccctct ggagcaagtg gtgaacgtgg tccccctggt cccatgggcc
3121 cccctggatt ggctggaccc cctggtgaat ctggacgtga gggggctcct ggtgccgaag
3181 gttcccctgg acgagacggt tctcctggcg ccaagggtga ccgtggtgag accggccccg
3241 ctggaccccc tggtgctcct ggtgctcctg gtgcccctgg ccccgttggc cctgctggca
3301 agagtggtga tcgtggtgag actggtcctg ctggtcccgc cggtcctgtc ggccctgttg
3361 gcgcccgtgg ccccgccgga ccccaaggcc cacgtggtga caagggtgag acaggcgaac
3421 agggcgacag aggcataaag ggtcaccgtg gcttctctgg cctccagggt ccccctggcc
3481 ctcctggctc tcctggtgaa caaggtccct ctggagcctc tggtcctgct ggtccccgag
3541 gtccccctgg ctctgctggt gctcctggca aagatggact caacggtctc cctggcccca
3601 ttgggccccc tggtcctcgc ggtcgcactg gtgatgctgg tcctgttggt ccccccggcc
3661 ctcctggacc tcctggtccc cctggtcctc ccagcgctgg tttcgacttc agcttcctgc
3721 cccagccacc tcaagagaag gctcacgatg gtggccgcta ctaccgggct gatgatgcca
3781 atgtggttcg tgaccgtgac ctcgaggtgg acaccaccct caagagcctg agccagcaga
3841 tcgagaacat ccggagccca gagggcagcc gcaagaaccc cgcccgcacc tgccgtgacc
3901 tcaagatgtg ccactctgac tggaagagtg gagagtactg gattgacccc aaccaaggct
3961 gcaacctgga tgccatcaaa gtcttctgca acatggagac tggtgagacc tgcgtgtacc
4021 ccactcagcc cagtgtggcc cagaagaact ggtacatcag caagaacccc aaggacaaga
4081 ggcatgtctg gttcggcgag agcatgaccg atggattcca gttcgagtat ggcggccagg
4141 gctccgaccc tgccgatgtg gccatccagc tgaccttcct gcgcctgatg tccaccgagg
4201 cctcccagaa catcacctac cactgcaaga acagcgtggc ctacatggac cagcagactg
4261 gcaacctcaa gaaggccctg ctcctccagg gctccaacga gatcgagatc cgcgccgagg
4321 gcaacagccg cttcacctac agcgtcactg tcgatggctg cacgagtcac accggagcct
4381 ggggcaagac agtgattgaa tacaaaacca ccaagacctc ccgcctgcgc atcatcgatg
4441 tggccccctt ggacgttggt gccccagacc aggaattcgg cttcgacgtt ggccatgtct
4501 gcttcctgta aactccctcc atcccaacct ggctccctcc cacccaacca actttccccc
4561 caacccggaa acagacaagc aacccaaact gaaccccctc aaaagccaaa aaatgggaga
4621 caatttcaca tggactttgg aaaatatttt tttcctttgc attcatctct caaacttagt
4681 ttttatcttt gaccaaccga acatgaccaa aaaccaaaag tgcattcaac cttaccaaaa
4741 aaaaaaaaaa aa
//