LOCUS BC036470 4033 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens cadherin 2, type 1, N-cadherin (neuronal), mRNA (cDNA
clone MGC:41765 IMAGE:5264944), complete cds.
ACCESSION BC036470
VERSION BC036470.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4033)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4033)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-AUG-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 73 Row: k Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14589888.
FEATURES Location/Qualifiers
source 1..4033
/db_xref="H-InvDB:HIT000051716"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:41765 IMAGE:5264944"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4033
/gene="CDH2"
/gene_synonym="CDHN"
/gene_synonym="CDw325"
/db_xref="GeneID:1000"
/db_xref="HGNC:HGNC:1759"
/db_xref="MIM:114020"
CDS 117..2837
/gene="CDH2"
/gene_synonym="CDHN"
/gene_synonym="CDw325"
/codon_start=1
/product="cadherin 2, type 1, N-cadherin (neuronal)"
/protein_id="AAH36470.1"
/db_xref="GeneID:1000"
/db_xref="HGNC:HGNC:1759"
/db_xref="MIM:114020"
/translation="MCRIAGALRTLLPLLAALLQASVEASGEIALCKTGFPEDVYSAV
LSKDVHEGQPLLNVKFSNCNGKRKVQYESSEPADFKVDEDGMVYAVRSFPLSSEHAKF
LIYAQDKETQEKWQVAVKLSLKPTLTEESVKESAEVEEIVFPRQFSKHSGHLQRQKRD
WVISPINLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQ
LSVTKPLDREQIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGTV
PEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVA
AGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVP
ENRVDIIVANLTVTDKDQPHTPAWNAVYRISGGDPTGRFAIQTDQNSNDGLVTVVKPI
DFEANRMFVLTVAAENQVPLAKGIQHPPQSTATMSVTVIDVNENPYFAPNPKIIRQEE
GLHAGTMLTTFTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESPNV
KNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAETCETPDPNSINIT
ALDYGIDPNAGPFAFDLPLSPVTIKRNWTITRLNGDFAQLNLKIKFLEAGIYEVPIII
TDSGNPPKSNISILRVKVCQCDSNGDCTDVDRIVGAGLGTGAIIAILLCIIILLILVL
MFVVWMKRRDKERQAKQLLIDPEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPDTVEP
DAIKPVGIRRMDERPIHAEPQYPVRSAAPHPGDIGDFINEGLKAADNDPTAPPYDSLL
VFDYEGSGSTAGSLSSLNSSSSGGEQDYDYLNDWGPRFKKLADMYGGGDD"
BASE COUNT 1188 a 845 c 888 g 1112 t
ORIGIN
1 agcggggggc cgtttctccg cgccgctgtt ggtgctgccg ctgcctcctc ctcctccgcc
61 gccgccgccg ccgccgccgc ctcctccggc tcttcgctcg gcccctctcc gcctccatgt
121 gccggatagc gggagcgctg cggaccctgc tgccgctgct ggcggccctg cttcaggcgt
181 ctgtagaggc ttctggtgaa atcgcattat gcaagactgg atttcctgaa gatgtttaca
241 gtgcagtctt atcgaaggat gtgcatgaag gacagcctct tctcaatgtg aagtttagca
301 actgcaatgg aaaaagaaaa gtacaatatg agagcagtga gcctgcagat tttaaggtgg
361 atgaagatgg catggtgtat gccgtgagaa gctttccact ctcttctgaa catgccaagt
421 tcctgatata tgcccaagac aaagagaccc aggaaaagtg gcaagtggca gtaaaattga
481 gcctgaagcc aaccttaact gaggagtcag tgaaggagtc agcagaagtt gaagaaatag
541 tgttcccaag acaattcagt aagcacagtg gccacctaca aaggcagaag agagactggg
601 tcatctctcc aatcaacttg ccagaaaact ccaggggacc ttttcctcaa gagcttgtca
661 ggatcaggtc tgatagagat aaaaaccttt cactgcggta cagtgtaact gggccaggag
721 ctgaccagcc tccaactggt atcttcatta tcaaccccat ctcgggtcag ctgtcggtga
781 caaagcccct ggatcgcgag cagatagccc ggtttcattt gagggcacat gcagtagata
841 ttaatggaaa tcaagtggag aaccccattg acattgtcat caatgttatt gacatgaatg
901 acaacagacc tgagttctta caccaggttt ggaatgggac agttcctgag ggatcaaagc
961 ctggaacata tgtgatgacc gtaacagcaa ttgatgctga cgatcccaat gccctcaatg
1021 ggatgttgag gtacagaatc gtgtctcagg ctccaagcac cccttcaccc aacatgttta
1081 caatcaacaa tgagactggt gacatcatca cagtggcagc tggacttgat cgagaaaaag
1141 tgcaacagta tacgttaata attcaagcta cagacatgga aggcaatccc acatatggcc
1201 tttcaaacac agccacggcc gtcatcacag tgacagatgt caatgacaat cctccagagt
1261 ttactgccat gacgttttat ggtgaagttc ctgagaacag ggtagacatc atagtagcta
1321 atctaactgt gaccgataag gatcaacccc atacaccagc ctggaacgca gtgtacagaa
1381 tcagtggcgg agatcctact ggacggttcg ccatccagac cgaccaaaac agcaacgacg
1441 ggttagtcac cgtggtcaaa ccaatcgact ttgaagcaaa taggatgttt gtccttactg
1501 ttgctgcaga aaatcaagtg ccattagcca agggaattca gcacccgcct cagtcaactg
1561 caaccatgtc tgttacagtt attgacgtaa atgaaaaccc ttattttgcc cccaatccta
1621 agatcattcg ccaagaagaa gggcttcatg ccggtaccat gttgacaaca ttcactgctc
1681 aggacccaga tcgatatatg cagcaaaata ttagatacac taaattatct gatcctgcca
1741 attggctaaa aatagatcct gtgaatggac aaataactac aattgctgtt ttggaccgag
1801 aatcaccaaa tgtgaaaaac aatatatata atgctacttt ccttgcttct gacaatggaa
1861 ttcctcctat gagtggaaca ggaacgctgc agatctattt acttgatatt aatgacaatg
1921 cccctcaagt gttacctcaa gaggcagaga cttgcgaaac tccagacccc aattcaatta
1981 atattacagc acttgattat ggcattgatc caaatgctgg accatttgct tttgatcttc
2041 ctttatctcc agtgactatt aagagaaatt ggaccatcac tcggcttaat ggtgattttg
2101 ctcagcttaa tttaaagata aaatttcttg aagctggtat ctatgaagtt cccatcataa
2161 tcacagattc gggtaatcct cccaaatcaa atatttccat actgcgcgtg aaggtttgcc
2221 agtgtgactc caacggggac tgcacagatg tggacaggat tgtgggtgcg gggcttggca
2281 ccggtgccat cattgccatc ctgctctgca tcatcatcct gcttatcctt gtgctgatgt
2341 ttgtggtatg gatgaaacgc cgggataaag aacgccaggc caaacaactt ttaattgatc
2401 cagaagatga tgtaagagat aatattttaa aatatgatga agaaggtgga ggagaagaag
2461 accaggacta tgacttgagc cagctgcagc agcctgacac tgtggagcct gatgccatca
2521 agcctgtggg aatccgacga atggatgaaa gacccatcca cgctgagccc cagtatccgg
2581 tccgatctgc agccccacac cctggagaca ttggggactt cattaatgag ggccttaaag
2641 cggctgacaa tgaccccaca gctccaccat atgactccct gttagtgttt gactatgaag
2701 gcagtggctc cactgctggg tccttgagct cccttaattc ctcaagtagt ggtggtgagc
2761 aggactatga ttacctgaac gactgggggc cacggttcaa gaaacttgct gacatgtatg
2821 gtggaggtga tgactgaact tcagggtgaa cttggttttt ggacaagtac aaacaatttc
2881 aactgatatt cccaaaaagc attcagaagc taggctttaa ctttgtagtc tactagcaca
2941 gtgcttgctg gaggctttgg cataggctgc aaaccaattt gggctcagag ggaatatcag
3001 tgatccatac tgtttggaaa aacactgagc tcagttacac ttgaatttta cagtacagaa
3061 gcactgggat tttatgtgcc tttttgtacc tttttcagat tggaattagt tttctgttta
3121 aggctttaat ggtactgatt tctgaaacga taagtaaaag acaaaatatt ttgtggtggg
3181 agcagtaagt taaaccatga tatgcttcaa cacgcttttg ttacattgca tttgctttta
3241 ttaaaataca aaattaaaca aacaaaaaaa ctcatggagc gattttatta tcttggggga
3301 tgagaccatg agattggaaa atgtacatta cttctagttt tagactttag tttgtttttt
3361 tttttttcac taaaatctta aaacttactc agctggttgc aaataaaggg agttttcata
3421 tcaccaattt gtagcaaaat tgaatttttt cataaactag aatgttagac acattttggt
3481 cttaatccat gtacactttt ttatttctgt atttttccac ttcactgtaa aaatagtatg
3541 tgtacataat gttttattgg catagtctat ggagaagtgc agaaacttca gaacatgtgt
3601 atgtattatt tggactatgg attcaggttt tttgcatgtt tatatctttc gttatggata
3661 aagtatttac aaaacagtga catttgattc aattgttgag ctgtagttag gatactcaat
3721 ttttaatttt tttaattttt ttatttttta ttttcttttt ggtttgggga gggagaaaag
3781 ttcttagcac aaatgtttta cataatttgt accaaaaaaa aaaaaaagga aaggaaagaa
3841 aggggtggcc tgacactggt ggcactacta agtgtgtgtt tttttaaaaa aaaaatggaa
3901 aaaaaaaagc ttttaaactg gagagacttc tgacaacagc tttgcctctg tattgtgtac
3961 cagaatataa atgatacacc tctgacccca gcgttctgaa taaaatgcta attttggaaa
4021 aaaaaaaaaa aaa
//