LOCUS BC036192 3258 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens collagen, type XIV, alpha 1, mRNA (cDNA clone
IMAGE:4838609), complete cds.
ACCESSION BC036192
VERSION BC036192.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3258)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3258)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 63 Row: c Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 55743095
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..3258
/db_xref="H-InvDB:HIT000094278"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4838609"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3258
/gene="COL14A1"
/db_xref="GeneID:7373"
/db_xref="HGNC:HGNC:2191"
/db_xref="MIM:120324"
CDS 297..1901
/gene="COL14A1"
/codon_start=1
/product="COL14A1 protein"
/protein_id="AAH36192.1"
/db_xref="GeneID:7373"
/db_xref="HGNC:HGNC:2191"
/db_xref="MIM:120324"
/translation="MKIFQRKMRYWLLPPFLAIVYFCTIVQGQVAPPTRLRYNVISHD
SIQISWKAPRGKFGGYKLLVTPTSGGKTNQLNLQNTATKAIIQGLMPDQNYTVQIIAY
NKDKESKPAQGQFRIKDLEKRKDPKPRVKVVDRGNGSRPSSPEEVKFVCQTPAIADIV
ILVDGSWSIGRFNFRLVRHFLENLVTAFDVGSEKTRIGLAQYSGDPRIEWHLNAFSTK
DEVIEAVRNLPYKGGNTLTGLALNYIFENSFKPEAGSRTGVSKIGILITDGKSQDDII
PPSRNLRESGVELFAIGVKNADVNELQEIASEPDSTHVYNVAEFDLMHTVVESLTRTL
CSRVEEQDREIKASAHAITGPPTELITSEVTARSFMVNWTHAPGNVEKYRVVYYPTRG
GKPDEVVVDGTVSSTVLKNLMSLTEYQIAVFAIYAHTASEGLRGTETTLALPMASDLL
LYDVTENSMRVKWDAVPGASGYLILYAPLTEGLAGDEKEMKIGETHTDIELSGLLPNT
EYTVTVYAMFGEEASDPVTGQETTSP"
BASE COUNT 1001 a 670 c 718 g 869 t
ORIGIN
1 cttctccctc ctgccgcctt atgaacaggg tgactgtttc cccatcggcc atgattttaa
61 gtttcctgag gcctccccag tcatgctgaa ctatactgtt cctaagagca tctgccccag
121 tcaacttctc atccacagat attaatctca gtcaacctcc agatttttag acatattttg
181 aaagtctttc atcaccagat ttcaaaggtg ttgatagata tctattttta aacatggaaa
241 gatggtggtg caatggccag tggctgctac accccatgta aaaagcggaa aataaaatga
301 agattttcca gcgcaagatg cggtactggt tgcttccacc ttttttggca attgtttatt
361 tctgcaccat tgtccaaggt caagtggctc cacccacaag gttaagatat aatgtaatat
421 ctcatgacag tatacagatt tcatggaagg ctccaagagg gaaatttggt ggttacaaac
481 ttcttgtgac tccaacttca ggtggaaaaa ctaaccagct gaatctgcag aacactgcaa
541 ctaaagcaat tattcaaggc cttatgccag accagaatta cacagttcaa attattgcat
601 acaataaaga taaagaaagc aagccagctc aaggccaatt cagaattaaa gatttagaaa
661 aaagaaagga tccaaagccc agagtcaaag ttgtggacag aggaaatggg agtagaccat
721 cttcaccaga agaagtgaaa tttgtctgtc aaactccagc aattgctgac attgtaatcc
781 tggtcgatgg ttcatggagt attggaagat tcaacttcag actggttcgg catttcttgg
841 aaaacctggt tacagcattc gatgtgggct cagagaagac acgaattggt cttgcacagt
901 atagtggcga ccccagaata gaatggcact tgaatgcatt tagcacaaaa gatgaagtga
961 ttgaagctgt ccgaaacctc ccatataaag gaggaaatac actaacaggt cttgctttga
1021 actacatttt tgaaaatagc ttcaaaccag aagcaggatc aaggactgga gtatccaaaa
1081 ttggcatttt aatcacagat ggaaaatccc aagatgacat tattccacca tctagaaatc
1141 ttcgtgagtc tggtgtagaa ctgtttgcca taggggtgaa aaacgcggat gtgaatgagc
1201 tgcaggagat cgcctccgaa ccagacagca ctcatgtgta caatgttgcc gaattcgatc
1261 tgatgcacac agttgtggag agtctgacca ggactctctg ctctagagtg gaagaacagg
1321 acagagaaat taaagcctca gcccatgcca tcactgggcc gcctacggag ttgattactt
1381 ctgaagtcac tgccagaagc tttatggtta actggactca tgccccagga aatgtggaaa
1441 aatacagagt tgtgtattat cctaccaggg gtggaaaacc agacgaggtg gtggtagatg
1501 gaactgtatc ttccacagtg ttgaaaaact tgatgtcttt aactgaatat cagatagcag
1561 tctttgcaat ctatgcccac actgctagtg aaggcctacg gggaactgaa actacacttg
1621 ctttaccgat ggcttctgac cttctactgt acgacgtgac tgagaacagc atgcgagtca
1681 aatgggatgc agtgcctggg gcctcaggtt acctgatcct ttatgctcct ctaacagagg
1741 gcctggctgg ggatgaaaaa gagatgaaaa ttggagagac ccacacagat attgaattga
1801 gtgggttgtt gcccaataca gaatacacag tcacagttta tgccatgttt ggagaagagg
1861 ccagtgatcc tgttacggga caagaaacaa catcacctta attattaaga gattcactaa
1921 ctcctacaag atctttattg tcaaagaatc agtatgtatt gaattaatga aagaactggg
1981 ctttgaggtt aggaaacatc atgcttcgtg gctatggctg tggctttaag tccaccaaga
2041 aacctgagaa tctccaatgt tggctctaac agtgctcgat taacctggga cccaacttca
2101 agacagatcc atggttatcg aattgtatat aacaatgcag atgggactga aatcaatgag
2161 gttgaagtcg atcctattac taccttccct ctgaagggct tgacacctct cacagagtat
2221 actattgcta ttttctgcat ctatgatgaa ggacagtcag agcctctgac tggagttttt
2281 accaccgagg aagttccagc ccagcaatac ttagaaattg atgaggtgac gacagacagt
2341 tttagggtga cctggcatcc cctctcagct gatgaagggc tacacaaatt gatgtggatt
2401 ccagtctatg gggggaagac tgaggaggtt gtcctgaaag aagagcagga ctcacatgtt
2461 attgaaggcc tggagctcgg tacggagtat gaagtttcac tattggccgt acttgatgat
2521 ggaagcgaga gtgaggtggt gactgctgtc gggaccacac ttgacagttt ttggacagaa
2581 ccagctacaa ccatagtgcc taccacatct gtgacttcag ttttccagac gggaatcaga
2641 aacctagttg taggtgatga aactacttct agcctgcggg taaaatggga catttctgac
2701 agcgatgtgc agcagtttag ggtgacctac atgacagctc aaggggaccc tgaggaagaa
2761 gtcataggaa cggtctgtat aaattcaact gactagaaac tctgcagatg ttactaacac
2821 agctaataag actgtcttcg gagatcaatg caaactttac tgctcttttc tcagtgactc
2881 tgccatctcc agaaactaat gttctctgtt aatctgactc cactactggc ttcttagtga
2941 cctttataaa tccaaaactt gctccatgta caacttgctc taagttaata acctctgaac
3001 attttttcaa atattgcttc tcttctgctg ccttgcacct gttcgagcac caaagttggg
3061 tcataaaagg ccatatgcac ttgtgtctgt atatatgtat gtatagacat gtataaaagt
3121 ttaatataga aaataatttc ttctgccctt ggaaatctga taaaaaaact tttaagcaaa
3181 ggacacagaa aaggtcttct atatggtata gtgaaaatat tcttaataaa ataccatccg
3241 tcaaaaaaaa aaaaaaaa
//