LOCUS BC036183 2931 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens peroxisomal biogenesis factor 5-like, mRNA (cDNA clone
MGC:39477 IMAGE:4793921), complete cds.
ACCESSION BC036183
VERSION BC036183.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2931)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2931)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 63 Row: a Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7706670.
FEATURES Location/Qualifiers
source 1..2931
/db_xref="H-InvDB:HIT000051638"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39477 IMAGE:4793921"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2931
/gene="PEX5L"
/gene_synonym="PEX5R"
/gene_synonym="PXR2"
/gene_synonym="PXR2B"
/db_xref="GeneID:51555"
CDS 339..2114
/gene="PEX5L"
/gene_synonym="PEX5R"
/gene_synonym="PXR2"
/gene_synonym="PXR2B"
/codon_start=1
/product="PEX5L protein"
/protein_id="AAH36183.2"
/db_xref="GeneID:51555"
/translation="MYQGHMQKSKEQGYGKLSSDEDLEIIVDQKQLVNEQQESRPLLS
PSIDDFLCETKSEAIARPVTSNTAVLTTGLDLLDLSEPVSQTQTKAKKSEPSSKTSSL
KKKADGSDLISTDAEQRGQPLRVPETSSLDLDIQTQLEKWDDVKFHGDRNTKGHPMAE
RKSSSSRTGSKELLWSSEHRYQPELSGGKSALNSESASELELVAPTQARLTKEHRWGS
ALLSRNHSLEEEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTISAS
EKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGIT
QAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTGHQQDACDALKNWIKQNPKY
KYLVKSKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDTDLQTGLGVLFH
LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIR
SRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLM
DQPELFQAANLGDLDVLLRAFNLDP"
BASE COUNT 922 a 669 c 685 g 655 t
ORIGIN
1 agggagcgag aaagagttcg gcgaagaagg agtgagttct agagacgccc cgcgagcagg
61 acccgcgcct gcaggagagc ctggccgacc cggctcctcg ccttctctgc gcgctctccc
121 gcgtccgctt tcagcacccc gagcggagaa cagttcccgg cagcccgcag cgctgccgag
181 tggccgccgg ccggccgagt acccggagct ccagggggct catgagcacc ctctgagaac
241 ccgctgtgca cccacctttt cacctctttt ggtgggcaag taagcacggg ggaaaagaat
301 ccggtggcct cagggagccc tgaagaaacc gaagcagaat gtaccaggga cacatgcaga
361 aaagtaaaga acaaggatat ggaaaactaa gcagtgatga agacctcgaa ataattgttg
421 atcaaaagca gctggtgaat gagcaacaag aaagcagacc cctcctgagt ccctccatcg
481 atgactttct ctgtgaaacc aaatcggaag caatagcaag gccagtaaca tccaatacag
541 ctgtattgac cactggctta gatctcctcg acctgagtga accagtctct caaacccaaa
601 ccaaagccaa gaagtcagag ccctcatcaa aaacatcatc cctcaagaaa aaggccgatg
661 gatctgacct catcagcacg gatgctgagc agagaggcca gcctctcaga gtcccggaga
721 cttcatcctt agatctagac attcaaacac aactggaaaa atgggacgat gttaagtttc
781 atggagatcg aaataccaag ggacatccaa tggcagagag aaaatcatcc tcatctagaa
841 ctggatcaaa agagctctta tggtcctcag aacacagata tcaaccagaa ctgagtggtg
901 gaaaaagcgc cctcaactct gagtcggctt cagaattgga attagtggct ccgactcagg
961 ctcgactgac caaagaacat cgctggggaa gcgcattact ttctagaaac cactccttag
1021 aagaagagtt tgaaagggca aaagcagcag tggagtcaga tacagagttt tgggataaga
1081 tgcaagcaga atgggaagaa atggctcgga ggaactggat atctgagaac caagaagccc
1141 agaaccaagt aaccatctcg gctagtgaga agggatatta ctttcacact gaaaacccct
1201 tcaaggactg gcctggagca tttgaagaag gcttaaaaag gctgaaggaa ggggatctgc
1261 cagtcaccat cctgttcatg gaagcagcaa ttcttcagga ccctggagat gcagaggcat
1321 ggcagttcct cgggataacc caggcggaga atgaaaatga acaagcagct attgtcgccc
1381 tccagaggtg cttagaatta cagcccaaca acttaaaagc tttgatggcc ttggctgtga
1441 gttatactaa cactggccat cagcaggatg cctgtgacgc tctgaagaat tggattaagc
1501 aaaatccaaa gtacaaatac cttgtgaaaa gcaagaaggg atctccaggc ctcacccggc
1561 ggatgtctaa gtccccagtt gatagctctg ttctggaagg ggtgaaggaa ttatatctgg
1621 aagctgccca ccaaaatgga gatatgatcg acacagacct gcagacaggt ctaggggttc
1681 tgttccacct gagtggagaa tttaatagag caatagatgc atttaacgct gccttaactg
1741 ttcggccaga ggactattca ctatggaacc gcctcggggc gaccttggcg aacggagacc
1801 gcagcgagga agccgtggag gcctatacgc gagcactgga gattcagcca ggattcatcc
1861 ggtccagata caacctagga ataagctgca tcaacctggg cgcctacaga gaagcggtca
1921 gcaattttct cactgccctc agtttgcaaa gaaagagcag gaatcagcag caagttcctc
1981 atcctgcaat ctctgggaat atctgggctg ccctcagaat tgcgctctct ctgatggacc
2041 aaccagaact cttccaggcg gctaatcttg gtgacctgga tgtcctctta agagctttca
2101 acttggatcc ttgaagaaag aataatacca gtactaataa tccctgatct gtgtgattgt
2161 actgaaaaat caaaaactat tttattatga atttcaaaag gataaatcaa atattcaaaa
2221 ggccatggtc atatagccca aggaaattaa ttcctgtgga caatgcccag tctctgttca
2281 gatccaaaag cacaaaatgt tgtatataga gtcaaagtca ggctcaaaag aagaattaag
2341 agactcaaga caaaccaaga taaagtaact gtgtgttgaa tactctttcc acaagttgca
2401 agcatattgc aacacatgtt ctttgggttt tttgtctccc cttgcagctg atgacacatc
2461 tgaggaactt gttcatggga aacatggaaa aagcactgcc tcagattggg aaattctgac
2521 tgtttctgaa ctgtcttctt ttgcaagact gaacatagtt tgggccattg gtgcatgcac
2581 atatattaac ttgtgactaa agacagacat tgcttaaacc tgttccaatt ttaactttta
2641 ctgtagccct ttgattccag agagggagct ttgctggcaa aagcagtttt tgcactagaa
2701 atttttgctg ttcccaatct aaacttttct ggtattgtat atatgcactt taatatctta
2761 tttatgcctt gctggagttt tgttttgttg ctccaatttt taacttgggg gtgaaagatt
2821 taagaactca gcctcactag atcaacggac caaataaaca attcctgaag acagttaaaa
2881 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaataaaaa aaaaaaaaaa a
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