LOCUS BC036096 2266 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens zinc finger protein 18, mRNA (cDNA clone MGC:33845
IMAGE:5301103), complete cds.
ACCESSION BC036096
VERSION BC036096.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2266)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2266)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC036096.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: o Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56118253.
FEATURES Location/Qualifiers
source 1..2266
/db_xref="H-InvDB:HIT000051624"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33845 IMAGE:5301103"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2266
/gene="ZNF18"
/gene_synonym="HDSG1"
/gene_synonym="KOX11"
/gene_synonym="Zfp535"
/gene_synonym="ZNF535"
/db_xref="GeneID:7566"
/db_xref="HGNC:HGNC:12969"
/db_xref="MIM:194524"
CDS 84..1733
/gene="ZNF18"
/gene_synonym="HDSG1"
/gene_synonym="KOX11"
/gene_synonym="Zfp535"
/gene_synonym="ZNF535"
/codon_start=1
/product="zinc finger protein 18"
/protein_id="AAH36096.1"
/db_xref="GeneID:7566"
/db_xref="HGNC:HGNC:12969"
/db_xref="MIM:194524"
/translation="MPVDLGQALGLLPSLAKAEDSQFSESDAALQEELSSPETARQLF
RQFRYQVMSGPHETLKQLRKLCFQWLQPEVHTKEQILEILMLEQFLTILPGEIQMWVR
KQCPGSGEEAVTLVESLKGDPQRLWQWISIQVLGQDILSEKMESPSCQVGEVEPHLEV
VPQELGLENSSSGPGELLSHIVKEESDTEAELALAASQPARLEERLIRDRDLGASLLP
AAPQEQWRQLDSTQKEQYWDLILETYGKMVSGAGISHPKSDLTNSIEFGEELAGIYLH
VNEKIPRPTCIGDRQENDKENLNLENHRDQELLHASCQASGEVPSQASLRGFFTEDEP
GCFGEGENLPEALQNIQDEGTGEQLSPQERISEKQLGQHLPNPHSGEMSTMWLEEKRE
TSQKGQPRAPMAQKLPTCRECGKTFYRNSQLIFHQRTHTGETYFQCTICKKAFLRSSD
FVKHQRTHTGEKPCKCDYCGKGFSDFSGLRHHEKIHTGEKPYKCPICEKSFIQRSNFN
RHQRVHTGEKPYKCSHCGKSFSWSSSLDKHQRSHLGKKPFQ"
BASE COUNT 645 a 526 c 577 g 518 t
ORIGIN
1 gtgtcctggt gaagacctag ttcttgcagg agacaattcc actgcagaag cactttactt
61 aaaaggactt gccaggctgg acaatgcccg ttgacttggg gcaggcccta ggcctgctgc
121 catcgctggc gaaggccgag gactcccagt tctcagaatc agatgctgcc cttcaagagg
181 aactctccag ccctgagacc gcacgccagc ttttcaggca gttccgttac caggtgatgt
241 ctgggcctca tgagaccttg aagcaacttc ggaagctctg tttccagtgg ctacagccag
301 aggttcacac caaagagcag atcctagaga tcctcatgtt ggagcagttt ctgaccatcc
361 tgcctgggga gatccagatg tgggtgcgga aacagtgtcc aggaagtgga gaagaggcag
421 tgacccttgt ggaaagcttg aagggggacc cccagagact gtggcaatgg atcagtatcc
481 aggttctagg acaggacatc ttatcagaga agatggaatc tccaagctgc caagtggggg
541 aagtggagcc ccatcttgaa gtggtgcctc aggagttggg acttgagaat tcatcctcag
601 ggcctgggga gcttctgagc cacatcgtga aagaggaatc tgacacagaa gcagaactag
661 ccctggctgc ctcccagcct gcccgactgg aggaaaggct gatcagagac cgggacctcg
721 gagcctcact gctcccagca gcacctcagg aacagtggag acaactggat tccactcaaa
781 aggagcaata ctgggatctc atcctggaga cctatgggaa aatggtctca ggagcaggca
841 tttcccatcc caaatctgac ctgactaatt caatagaatt tggggaagag ctggcaggaa
901 tataccttca tgtcaatgag aagatcccaa gacccacctg cataggagat agacaagaga
961 atgacaagga gaacctaaat ttggagaatc acagggacca ggagctcctg catgcttcct
1021 gtcaagcttc aggagaggtt ccttctcagg cttccttgag gggcttcttc actgaggatg
1081 agccaggatg ctttggagaa ggagagaatc tccctgaggc tctgcaaaac attcaggatg
1141 agggaacagg ggaacagctg tctcctcaag aaaggatttc tgagaaacaa ctaggtcagc
1201 atttgcctaa tcctcattca ggagaaatgt ccaccatgtg gcttgaggag aagagagaga
1261 cctcccagaa ggggcagcca agagccccca tggcccagaa gctccccacc tgcagggagt
1321 gtgggaagac cttttatagg aattctcagc ttatttttca ccaaagaact cacaccggag
1381 agacatactt tcagtgcacc atctgcaaaa aagcctttct gcggagttca gactttgtga
1441 agcatcagag aactcacacg ggagagaagc cctgtaaatg tgattactgt gggaaaggct
1501 ttagtgactt ctcaggattg cgccaccacg agaaaatcca cacaggagag aaaccctata
1561 aatgtcctat ctgtgagaaa agtttcattc agagatcaaa ctttaataga catcagaggg
1621 ttcacactgg agagaaacct tataaatgtt cgcactgtgg gaaaagtttc agctggagct
1681 cgagccttga caaacatcaa agatcccact taggaaagaa gccctttcaa tagccagtaa
1741 ccaaactctc tttccccatt tctatctccc agcccagtca caaaaatact cagctccatc
1801 aagaggaatt gtgtctaaga ggatacccct gttaatctcc ttttttcttg gattggagag
1861 gagagaatct ggacatggct ttggacttgg aggatatctt ggattggatt gcacaatggc
1921 ttaaattctt gattctgcct caggagaaag aatagtcttc atgtttccac tcatccttcc
1981 tttggaccca tcggggaaaa agtctaaatt ggagatccag ttttagaagt gctttctggg
2041 aagcatttaa tgggattagc tgtagtcact gcttatggga agaacctcag atcagcccct
2101 taaaatgagt tctagagcag gtcttctgtt ccagaagggg agaagcatag agggcctgtg
2161 agctcacgtg tgttctttgt cataggggtg aaaaactaac ttcaagtgtc ccttgtttga
2221 aataaactta gcagagtcac tttctatctc aaaaaaaaaa aaaaaa
//