LOCUS BC036083 2812 bp mRNA linear HUM 28-JUL-2005 DEFINITION Homo sapiens solute carrier family 6 (neurotransmitter transporter, GABA), member 11, mRNA (cDNA clone IMAGE:5313099), complete cds. ACCESSION BC036083 VERSION BC036083.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2812) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2812) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 48 Row: p Column: 12 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 7657586 This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..2812 /db_xref="H-InvDB:HIT000051616" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:5313099" /tissue_type="Brain, hypothalamus" /clone_lib="NIH_MGC_96" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..2812 /gene="SLC6A11" /gene_synonym="GAT-3" /gene_synonym="GAT3" /db_xref="GeneID:6538" /db_xref="MIM:607952" CDS 66..692 /gene="SLC6A11" /gene_synonym="GAT-3" /gene_synonym="GAT3" /codon_start=1 /product="SLC6A11 protein" /protein_id="AAH36083.1" /db_xref="GeneID:6538" /db_xref="MIM:607952" /translation="MTAEKALPLGNGKAAEEARESEAPGGGCSSGGAAPARHPRVKRD KAVHERGHWNNKVEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFLIPYVVFFICCGIP VFFLETALGQFTSEGGITCWRKVCPLFEGIGYATQVIEAHLNVYYIIILAWAIFYLSN CFTTELPWATCGHEWNTENCVEFQKLNVSNYSHVSLQNATSPVMEFWE" BASE COUNT 706 a 556 c 705 g 845 t ORIGIN 1 aaaagccagc tcgcccgggg cggcggcgca gagccgggcc ggcgcacgag gcagccagcg 61 cggccatgac ggcggagaag gcgctgcccc tgggcaatgg gaaggctgct gaggaggcgc 121 gggagtccga ggcgccgggt ggcggctgca gcagcggggg cgcggcgccc gcgcgccacc 181 cgcgcgtcaa gcgcgacaag gcggtccacg agcgcggcca ctggaacaac aaggtggagt 241 tcgtgctgag cgtggccggg gagatcattg ggctgggcaa cgtgtggcgc ttcccctacc 301 tgtgctacaa gaacggagga ggggcattcc tgattcccta cgtggtgttt tttatttgct 361 gtggaattcc tgtttttttc ctggagacag ctctggggca gttcacaagt gaaggtggca 421 ttacgtgttg gaggaaagtt tgccctttat ttgaaggcat tggctatgca acacaggtga 481 ttgaggccca tctgaatgtg tactacatca tcatcctggc atgggccatt ttttacctga 541 gcaactgctt cactactgag ctaccctggg ctacctgtgg gcatgagtgg aacacagaga 601 attgtgtgga gttccagaaa ctgaatgtga gcaactacag ccatgtgtct ctgcagaatg 661 ccacctcccc tgtcatggag ttttgggagt aagtggagaa gaacttgtct cccttggcct 721 gtgggggctc tgtcctggtt ctgctcagtt ggtcttgccc ctattcctgg aaaaagcctg 781 atccttcttg cagcctggca cttcctggct tctgtgagca ttcgacagct tcggaagcaa 841 gagtgcagat cttcagaggt ttcccaaagg ggcagctgag agaaatgttt tcttgttctt 901 tgataacatg tcagcatgca tagtgggtta ttagggcagg aagtacttgg tgaaaggata 961 gacagtttaa aaattcattt tgagcaaaag aggagatgca gcctgtttgc aataagctaa 1021 gtcaagagtg tatttagcct ggaaagcata agtctctaga ggggataggt tagctttctt 1081 tcagtagctg aagtgtcata tggaaaagaa ggagatcaaa tttaatggat agagattata 1141 aagaggcagg tttcaaatgt gcgtagggaa gaacttggtc tcatagcata gcattatctg 1201 gaagcacttc agaaggttgt gagcacccat ccctggaagt tgaccagtat agggttgcca 1261 atcattgttg ggggtgtgtc tgaatccact gaaattataa gtagtacttg tgtggttggg 1321 cattttccca gaaattggca tagttttatc agagttccaa aggatctgtg acccttacag 1381 ggctgctatg tgtggttgtg tacattgcac actgaacaac ccaaggggcc ataatttaca 1441 ttatgaaata tacattccag aattgtgtgg tgcacgacct gtataaccat acacagtggc 1501 cctgacttgc aagtttgttt taaaggtaga aggatcactt gccccaggta ttggaaagaa 1561 gtttcctgta tgggtcaaag gctggactaa atgctttctg aagcttttca atctaaaaag 1621 tcctggcttc attgaagaag cctcccttac tctgatggtg attaatagta gtatatgtgt 1681 gtgtggtggg gcagtggttt atgagtgatt tttatttttt tcccagatac cattcgtctc 1741 ctgccttctc tagaggtcat tatgctgaat ttagatttac cactctcata taaatcttca 1801 tacttttcat atatatatgc cccaaatagc acctaggtct ttattgcata tttttcaaat 1861 ttgtgatact ggcatccatt atttacattt tttataacaa ctttatttct ttgctcaata 1921 ttggttctta gatgtatcca tattggtaca tgtagctttg gttctttcat ttttctatca 1981 gagtatttca ttgtatgaat ggcctgtgtt gtatttatcc aggtcctctt ggtcctcttg 2041 atgggcattt aggctgttgc ccatttctca ctattattaa gcacactgag tgaatgtcta 2101 gtctgtgctt ccttgagtgg aattgctggg ttgtagcata catgcgttgt cagttttatc 2161 atataacgta aaattacttt agaaagaaat taatctaggc caggcatggt ggctcacacc 2221 tgtaattcca gcactttggg aagccgaggt gggcggatca cctgaggtca ggagtttgag 2281 accagcctgg ccaacatggt gaaaccctgt ctttactaaa aatacaaaaa ttagctgggt 2341 agtggttcat gcctgcaatc tcatctactc aggaggttga agcaggagaa tcacttgaac 2401 ctggaaggcg aaagttgcag tgagccgaga tcggcgccac tgcactccag cctgggtgac 2461 agagcgagac tgtctcaaaa aaaaaaaaaa aaaaattaat ctacactcca aacaagagtt 2521 tgtgagaatt tctgcagctt cacattttgg acagcacttg gtctgttcag tttttgtttt 2581 gccagtgtaa tgggcattaa atgataactt actattttaa attcacattt ctctaattac 2641 ttgtgaggtt aagcaccttt tcatgttttg ttttgtctgt tttttgctat ttgatttctg 2701 tacctgtgaa cttcaggttt acattcgttt ctatttggat agtttgtctt ttcttacaga 2761 tagaaattgt taatacattc tagatattat cttttcaaaa aaaaaaaaaa aa //