LOCUS BC035960 2102 bp mRNA linear HUM 21-OCT-2003
DEFINITION Homo sapiens protein tyrosine phosphatase, receptor type, O, mRNA
(cDNA clone IMAGE:4610767), complete cds.
ACCESSION BC035960
VERSION BC035960.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2102)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2102)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 41 Row: f Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13677212
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2102
/db_xref="H-InvDB:HIT000051560"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4610767"
/tissue_type="Kidney"
/clone_lib="NIH_MGC_75"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..2102
/gene="PTPRO"
/gene_synonym="GLEPP1"
/gene_synonym="PTP-U2"
/gene_synonym="PTPU2"
/db_xref="GeneID:5800"
/db_xref="MIM:600579"
CDS 186..1979
/gene="PTPRO"
/gene_synonym="GLEPP1"
/gene_synonym="PTP-U2"
/gene_synonym="PTPU2"
/codon_start=1
/product="PTPRO protein"
/protein_id="AAH35960.1"
/db_xref="GeneID:5800"
/db_xref="MIM:600579"
/translation="MGHLPTGIHGARRLLPLLWLFVLFKNATAFHVTVQDDNNIVVSL
EASDVISPASVYVVKITGESKNYFFEFEEFNSTLPPPVIFKASYHGLYYIITLVVVNG
NVVTKPSRSITVLTKPLPVTSVSIYDYKPSPETGVLFEIHYPEKYNVFTRVNISYWEG
KDFRTMLYKDFFKGKTVFNHWLPGMCYSNITFQLVSEATFNKSTLVEYSGVSHEPKQH
RTAPYPPQNISVRIVNLNKNNWEEQSGNFPEESFMRSQDTIGKEKLFHFTEETPEIPS
GNISSGWPDFNSSDYETTSQPYWWDSASAAPESEDEFVSVLPMEYENNSTLSETEKST
SGSFSFFPVQMILTWLPPKPPTAFDGFHIHIEREENFTEYLMVDEEAHEFVAELKEPG
KYKLSVTTFSSSGSCETRKSQSAKSLSFYISPSGEWIEELTEKPQHVSVHVLSSTTAL
MSWTSSQENYNSTIVSVVSLTCQKQKESQRLEKQYCTQVNSSKPIIENLVPGAQYQVV
IYLRKGPLIGPPSDPVTFAIVPTGIKDLMLYPLGPTAVVLSWTRPYLGVFRKYVVEMF
YFNPATMTSEWTTYYEIAATVSLTASVVIFP"
BASE COUNT 629 a 478 c 449 g 546 t
ORIGIN
1 gggaggaccc cgggcgcaga ggaggaaagg gagcaggcgc agggggactg gaaaggcagc
61 atgcgctcgc caggagcaac ctcggcgccc agggtctgag gctgcagccc cagttcgcca
121 ttgtgagccg ccgccggggg agtccgctag cgcagccgtg cccccgagtc cccgtccgcg
181 cagcgatggg gcacctgccc acggggatac acggcgcccg ccgcctcctg cctctgctct
241 ggctctttgt gctgttcaag aatgctacag ctttccatgt aactgtccaa gatgataata
301 acatcgttgt ctcattagaa gcttcagacg tcatcagtcc agcatctgtg tatgttgtga
361 agataactgg tgaatccaaa aattatttct tcgaatttga ggaattcaac agcactttgc
421 ctcctcctgt tattttcaag gccagttatc atggccttta ttatataatc actctggtag
481 tggtaaatgg aaatgtggtg accaagccat ccagatcaat cactgtgtta acaaaacctc
541 tacctgtaac cagtgtttcc atatatgact ataaaccttc tcctgaaaca ggagtcctgt
601 ttgaaataca ttatccagaa aaatataacg ttttcacaag agtgaacatt agctactggg
661 aaggtaaaga cttccggaca atgctatata aagatttctt taagggaaaa acagtattta
721 atcactggct gccaggaatg tgttatagta atatcacctt tcagctggta tctgaggcaa
781 cttttaataa aagtaccctt gttgagtaca gtggtgtcag tcacgaaccc aaacagcaca
841 gaactgcccc ttatccacct caaaatattt ccgttcgtat cgtaaacttg aacaaaaaca
901 actgggaaga acagagtggc aatttcccag aagaatcctt catgagatca caagatacaa
961 taggaaaaga aaaactcttc cattttacag aagaaacccc tgaaattccc tcgggcaaca
1021 tttcttccgg ttggcctgat tttaatagca gtgactatga aactacgtct cagccatatt
1081 ggtgggacag tgcatctgca gctcctgaaa gtgaagatga atttgtcagc gtacttccca
1141 tggaatacga aaataacagt acactcagtg agacagagaa gtcaacatca ggctctttct
1201 cctttttccc tgtgcaaatg atattgacct ggttaccacc caaaccaccc actgcttttg
1261 atgggttcca tatccatatt gaacgagaag agaactttac tgaatatttg atggtggatg
1321 aagaagcaca tgaatttgtt gcagaactga aggaacctgg gaaatataag ttatctgtga
1381 caacctttag ttcctcagga tcttgtgaaa ctcgaaaaag tcagtcagca aaatcactca
1441 gcttttatat cagtccttca ggagagtgga ttgaagaact gaccgagaag ccgcagcacg
1501 tgagtgtcca cgttttaagc tcaaccactg ccttgatgtc ctggacatct tcccaagaga
1561 actacaacag caccattgtg tctgtggtgt cgctgacctg ccagaaacaa aaggagagcc
1621 agaggcttga aaagcagtac tgcactcagg tgaactcaag caaacctatt attgaaaatc
1681 tggttcctgg tgcccagtac caggttgtaa tatacctaag gaaaggccct ttgattggac
1741 caccttcaga tcctgtgaca tttgctattg ttcccacagg aataaaggat ttaatgctct
1801 atcctttggg tcctacggcc gtggttctga gctggaccag accttattta ggcgtgttca
1861 gaaaatacgt ggttgaaatg ttttatttca accctgctac aatgacatca gagtggacca
1921 cctactatga aatagcagca actgtttcct taactgcatc cgtggtaatc ttcccttaac
1981 caactgtcag tctttcctat gggaacaggc aaacctttat gtaccaaatg tgtctttaag
2041 aaattatcta taaatttgat tattttgtaa agaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2101 aa
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