LOCUS BC035911 1160 bp mRNA linear HUM 03-FEB-2004
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 55, mRNA (cDNA
clone IMAGE:5493465), complete cds.
ACCESSION BC035911
VERSION BC035911.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1160)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1160)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 78 Row: m Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1160
/db_xref="H-InvDB:HIT000051550"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5493465"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1160
/gene="DDX55"
/gene_synonym="KIAA1595"
/gene_synonym="MGC33209"
/db_xref="GeneID:57696"
CDS 101..724
/gene="DDX55"
/gene_synonym="KIAA1595"
/gene_synonym="MGC33209"
/codon_start=1
/product="DDX55 protein"
/protein_id="AAH35911.1"
/db_xref="GeneID:57696"
/translation="MKPQRNTADLLPKLKSMALADRAVFEKGMKAFVSYVQAYAKHEC
NLIFRLKDLDFASLARGFALLRMPKMPELRGKQFPDFVPVDVNTDTIPFKDKIREKQR
QKLLEQQRREKTENEGRRKFIKNKAWSKQKAKKEKKKKMNEKRKREEGSDIEDEDMEE
LLNDTRLLKKLKKGKITEEEFEKGLLTTGKRTIKTVDLGISDLEDDC"
BASE COUNT 471 a 196 c 268 g 225 t
ORIGIN
1 ccacgcgtcc gaagttgtga tggggagccc tggggatatg atgccagcca gggaaggtga
61 gaatgtggta tgtgtgtgtg tgtagtgccc cctgcaggag atgaagcccc agagaaacac
121 agcggacctt ctgccaaaac tcaagtccat ggccctggct gacagagctg tgtttgaaaa
181 gggcatgaaa gcttttgtgt catatgtcca agcttatgca aagcatgaat gcaacctgat
241 tttcagatta aaggatcttg attttgccag ccttgctcga ggttttgccc tgctgaggat
301 gcccaagatg ccagaattga gagggaagca gtttccagat tttgtgcccg tggacgttaa
361 taccgacacg attccattta aagataaaat cagagaaaag cagaggcaga aactcctgga
421 gcaacaaaga agagagaaaa cagaaaatga agggagaaga aaattcataa aaaataaagc
481 ttggtcaaag cagaaggcca aaaaagaaaa gaagaaaaaa atgaatgaga aaaggaaaag
541 ggaagagggt tctgatattg aagatgagga catggaagaa cttcttaatg acacaagact
601 cttgaaaaaa cttaagaaag gcaaaataac tgaagaagaa tttgagaagg gcttgttgac
661 aactggcaaa agaacaatca agacagtgga tttagggatc tcagatttgg aagatgactg
721 ctaattccag tgccacagat gaacccacaa ggacatagct gttccctaac ttggtggatg
781 gctccagttt gcttttaacg aaaatcacaa cttcaggaga catctgaaaa gaatgatgtc
841 tctgaaagct gtcctttcag atgagggaga aatgaaggat ttcacacttc agaatatttt
901 actaaaaaca ttccagtctt ggccgggtgc ggtggctcct gcctataatc ccagcacttt
961 gggaggctga ggcaggagga tcacttgagc ccaggagttc aagaccagcc tgggaacaca
1021 gcgagaccct ctcattaaaa acaacaaaac aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1081 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1141 aaaaaaaaaa aaaaaaaaaa
//