LOCUS BC035798 2430 bp mRNA linear HUM 04-AUG-2008
DEFINITION Homo sapiens chromosome 11 open reading frame 87, mRNA (cDNA clone
MGC:46342 IMAGE:5735100), complete cds.
ACCESSION BC035798
VERSION BC035798.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2430)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2430)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Invitrogen
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 79 Row: j Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46559746.
FEATURES Location/Qualifiers
source 1..2430
/db_xref="H-InvDB:HIT000094093"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:46342 IMAGE:5735100"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_124"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2430
/gene="C11orf87"
/gene_synonym="LOH11CR1A"
/db_xref="GeneID:399947"
/db_xref="HGNC:HGNC:33788"
CDS 324..917
/gene="C11orf87"
/gene_synonym="LOH11CR1A"
/codon_start=1
/product="chromosome 11 open reading frame 87"
/protein_id="AAH35798.2"
/db_xref="GeneID:399947"
/db_xref="HGNC:HGNC:33788"
/translation="MSARAPKELRLALPPCLLNRTFASPNASGSGNTGARGPGAVGSG
TCITQVGQQLFQSFSSTLVLIVLVTLIFCLIVLSLSTFHIHKRRMKKRKMQRAQEEYE
RDHCSGSRGGGGLPRPGRQAPTHAKETRLERQPRDSPFCAPSNASSLSSSSPGLPCQG
PCAPPPPPPASSPQGAHAASSCLDTAGEGLLQTVVLS"
BASE COUNT 575 a 664 c 539 g 652 t
ORIGIN
1 ttctgcagcc gccactgcag ccgcgcggcg ggggctccct ccttgcagcc agccggcggt
61 ccagcctggt gcctctgcaa aggaaagggg agcgtggaga cgtgttcgag gtggtatcgg
121 cgaggatctc tcgggcgccg ctcactcctt ggtcgccttg cttgccagca gttgctccct
181 tagtccttgg ctcgctcgca caccccctcc cgctacaggg agcagttttg ggtggcgtgg
241 gctccgtcct cttcttggct ggtaggaacg gtgtgcccaa gaggggaagc ctagtgggcc
301 tggcccctcc cagccccgcg ccaatgagtg ccagggcgcc gaaggagctg aggctggcgt
361 tgccgccgtg tctcctcaac cggacctttg cttcccccaa cgccagcggc agcggcaaca
421 cgggtgcccg cggcccaggc gcagtaggca gcggcacctg catcacgcag gtgggacagc
481 agctcttcca gtccttctcc tccacgctgg tgctgattgt cctggttacc ctcatcttct
541 gcctcatcgt gctgtccctc tccactttcc acatccacaa gcgtaggatg aagaagcgga
601 agatgcagag ggctcaggag gaatatgagc gggatcactg cagcggcagc cgcggtggcg
661 gggggctgcc ccgacctggc aggcaggccc caacccacgc aaaggaaacc cggctggaga
721 ggcagccccg ggactctccc ttctgcgccc cttccaacgc ctcgtcgttg tcctcttcgt
781 cccctggcct cccgtgccag ggtccctgtg ctcctccgcc tccaccgcca gcctccagtc
841 cccaaggagc acacgcagct tcctcctgtt tggacacagc tggcgagggc cttttgcaaa
901 cggtggtact gtcctgatcg tctagcccct ctcgttcccc gtcctcgttt ccagcatctt
961 tgccaccctt gcttttttcc ttcttccttc cttttccatt ttcctctggc ccctctttcc
1021 tcttcctggt ttccttacct gccctcccct tactcttgtt tctcctccgc cgaggcactg
1081 tgcggtattt gtaaatattg ggcgaggaaa gtctcggaag aagaaataac gctgataata
1141 atactttatt aatatttata gtaattatta taatactaat aacacaatcc aagcgcatga
1201 caaatcacat aatttctaac tgtcaatgga ggatgcatct tcccattcca ccccgcgctc
1261 ccctcaatta ggaggagaaa ccgcacaagc taccaaatat ataaaaggca ttgattcccg
1321 gagcaaaggg aggggagggg gcccggtaat gtacatagct gtcaagttaa gatttagttt
1381 ccttccttcc cctctgaccc ctaagctttc acttttcctt tagcttccct ttcctcccca
1441 ttcccaccct cagccgggct caggcaatag tatattataa agaaaatgtc tacattaagc
1501 accaggactg caagaggcca tagagaatag tccccggaaa gtgtttatga caggtacccc
1561 tcgccagtcc gcccatttct caccctttgg ttaaccatta cattttccag gacagagcat
1621 ttaatttact ttttaaaatg accctcgctg gccgagcata agtacgttaa aatctttaaa
1681 tgagtttttt ttaaaaagct aacgctttca ttccctgccc cgcccccacc cgtacacctt
1741 tgacttgtga cattttcagg atttacaaag gatctgggag ctgtccagcc aggtctggtg
1801 ctgaagtcgc ctcaccgttc tgattacttc ctctagttgt gaaggcagag gaggggctgt
1861 tttggaaagt gactattctg gcttttggtt gggttctttc ttctttttct acaatcgagt
1921 tagcgtgtac tattggtttt cttattatta aacattgcat aagttacctt ttttgtaaaa
1981 aaaaaaaagt attaggtgat gtgcagtact gaaagtgcag tatctaacca actagaacgt
2041 ttgttttatt tttagaacaa gtgcaccttt gttatatatt tagtatattg gtaccaaata
2101 cagaaaaaaa ctatagttct gtactatgtc ctccaaactg tatattattg ttcttaattt
2161 ccagctgttg atataatggt taccactgga tgagaaattc agtggtgcag acctggcttc
2221 tgctgtttcc agaagtgttc ttttgtacct tattctgtag tagactgtta taaaaagatg
2281 acacacacgc tttatttttt cttttgcaaa taatagaaaa aacacaacca cagaaacaaa
2341 caaataatgg atgtgcaaga atgccatcta ttaaaaacat ggttaataaa aaaaaaaaaa
2401 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//