LOCUS BC035607 1630 bp mRNA linear HUM 07-OCT-2003
DEFINITION Homo sapiens LIM domain only 2 (rhombotin-like 1), mRNA (cDNA clone
MGC:45171 IMAGE:5186480), complete cds.
ACCESSION BC035607
VERSION BC035607.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1630)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1630)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 68 Row: l Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6633806.
FEATURES Location/Qualifiers
source 1..1630
/db_xref="H-InvDB:HIT000051437"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45171 IMAGE:5186480"
/tissue_type="Colon, Kidney, Stomach, adult, whole pooled"
/clone_lib="NIH_MGC_116"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1630
/gene="LMO2"
/gene_synonym="RBTN2"
/gene_synonym="RBTNL1"
/gene_synonym="RHOM2"
/gene_synonym="TTG2"
/db_xref="GeneID:4005"
/db_xref="MIM:180385"
CDS 328..804
/gene="LMO2"
/gene_synonym="RBTN2"
/gene_synonym="RBTNL1"
/gene_synonym="RHOM2"
/gene_synonym="TTG2"
/codon_start=1
/product="LMO2 protein"
/protein_id="AAH35607.1"
/db_xref="GeneID:4005"
/db_xref="MIM:180385"
/translation="MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLK
AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR
AYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI"
misc_feature 415..594
/gene="LMO2"
/gene_synonym="RBTN2"
/gene_synonym="RBTNL1"
/gene_synonym="RHOM2"
/gene_synonym="TTG2"
/note="LIM; Region: LIM domain. This family represents two
copies of the LIM structural domain"
/db_xref="CDD:pfam00412"
misc_feature 607..786
/gene="LMO2"
/gene_synonym="RBTN2"
/gene_synonym="RBTNL1"
/gene_synonym="RHOM2"
/gene_synonym="TTG2"
/note="LIM; Region: LIM domain. This family represents two
copies of the LIM structural domain"
/db_xref="CDD:pfam00412"
BASE COUNT 420 a 405 c 451 g 354 t
ORIGIN
1 gaaggttaag tcctgagcag cagcagcagc tgcagccgcc tggagccagg ctgcgcgccc
61 cggcccccgc ctcggccgcg gcgcgcccgc agcccggtga ttcgctctct ctctttggcg
121 tttgaaggga gcgcggtgac tgtccttgag cgcggagggg cgagctcgcc ggcggagcgc
181 cggagcaagc ggaggcgcag gagcggcggc gacggcggcg gcggcggcgg cgcccgagca
241 cccgaggggg tccgagcccc ggcagccggc cagccccgcg ccacaaaggg agcgcccccg
301 ccgcccggca ccccgcctcc ctccccaatg tcctcggcca tcgaaaggaa gagcctggac
361 ccttcagagg aaccagtgga tgaggtgctg cagatccccc catccctgct gacatgcggc
421 ggctgccagc agaacattgg ggaccgctac ttcctgaagg ccatcgacca gtactggcac
481 gaggactgcc tgagctgcga cctctgtggc tgccggctgg gtgaggtggg gcggcgcctc
541 tactacaaac tgggccggaa gctctgccgg agagactatc tcaggctttt tgggcaagac
601 ggtctctgcg catcctgtga caagcggatt cgtgcctatg agatgacaat gcgggtgaaa
661 gacaaagtgt atcacctgga atgtttcaag tgcgccgcct gtcagaagca tttctgtgta
721 ggtgacagat acctcctcat caactctgac atagtgtgcg aacaggacat ctacgagtgg
781 actaagatca atgggatgat ataggcccga gtccccgggc atctttgggg aggtgttcac
841 tgaagacgcc gtctccatgg catcttcgtc ttcactctta ggcactttgg gggtttgagg
901 gtggggtaag ggatttctta ggggatggta gacctttatt gggtatcaag acatagcatc
961 caagtggcat aattcagggg ctgacacttc aaggtgacag aaggaccagc ccttgaggga
1021 gaacttatgg ccacagccca tccatagtaa ctgacatgat tagcagaaga aaggaacatt
1081 taggggcaag caggcgctgt gctatcatga tggaatttca tatctacaga tagagagttg
1141 ttgtgtacag acttgttgtg actttgacgc ttgcgaacta gagatgtgca attgatttct
1201 tttcttcctg gctttttaac tcccctgttt caatcactgt cctccacaca agggaaggac
1261 agaaaggaga gtggccattc tttttttctt ggcccccttc ccaaggcctt aagctttgga
1321 cccaaggaaa actgcatgga gacgcatttc ggttgagaat ggaaaccaca acttttaacc
1381 aaacaattat ttaaagcaat gctgatgaat cactgttttt agacaccttc attttgaggg
1441 gaggagttcc acagattgtt tctatacaaa tataaatctt aaaaagttgt tcaactattt
1501 tattatccta gattatatca aagtatttgt cgtgtgtaga aaaaaaaaac agctctgcag
1561 gcttaataaa aatgacagac tgaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1621 aaaaaaaaaa
//