LOCUS BC035339 2746 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens neuronal pentraxin II, mRNA (cDNA clone MGC:35520
IMAGE:5198692), complete cds.
ACCESSION BC035339
VERSION BC035339.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2746)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2746)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 50 Row: p Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..2746
/db_xref="H-InvDB:HIT000093834"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:35520 IMAGE:5198692"
/tissue_type="Brain, adult, 6 pooled whole brains"
/clone_lib="NIH_MGC_114"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2746
/gene="NPTX2"
/gene_synonym="NARP"
/gene_synonym="NP-II"
/gene_synonym="NP2"
/db_xref="GeneID:4885"
/db_xref="HGNC:HGNC:7953"
/db_xref="MIM:600750"
CDS 171..1466
/gene="NPTX2"
/gene_synonym="NARP"
/gene_synonym="NP-II"
/gene_synonym="NP2"
/codon_start=1
/product="neuronal pentraxin II"
/protein_id="AAH35339.1"
/db_xref="GeneID:4885"
/db_xref="HGNC:HGNC:7953"
/db_xref="MIM:600750"
/translation="MLALLAASVALAVAAGAQDSPAPGSRFVCTALPPEAVHAGCPLP
AMPMQGGAQSPEEELRAAVLQLRETVVQQKETLGAQREAIRELTGKLARCEGLAGGKA
RGAGATGKDTMGDLPRDPGHVVEQLSRSLQTLKDRLESLEHQLRANVSNAGLPGDFRE
VLQQRLGELERQLLRKVAELEDEKSLLHNETSAHRQKTESTLNALLQRVTELERGNSA
FKSPDAFKVSLPLRTNYLYGKIKKTLPELYAFTICLWLRSSASPGIGTPFSYAVPGQA
NEIVLIEWGNNPIELLINDKVAQLPLFVSDGKWHHICVTWTTRDGMWEAFQDGEKLGT
GENLAPWHPIKPGGVLILGQEQDTVGGRFDATQAFVGELSQFNIWDRVLRAQEIVNIA
NCSTNMPGNIIPWVDNNVDVFGGASKWPVETCEERLLDL"
BASE COUNT 588 a 785 c 807 g 566 t
ORIGIN
1 cgagcagcgc ggtgggtgcg gctgtgagac ggcaggagac ttctgccccg cggtgcacgc
61 gaccctcgag acgacagcgc ggctactgcc agcagcgaag gcgcctcccg cggagcgccc
121 agacggcgcc cgctcgccca tgccgagctg agcgcggcag cggcggcggg atgctggcgc
181 tgctggccgc cagcgtggcg ctcgccgtgg ccgctggggc ccaggacagc ccggcgcccg
241 gtagccgctt cgtgtgcacg gcactgcccc cagaggcggt gcacgccggc tgcccgctgc
301 ccgcgatgcc catgcagggc ggcgcgcaga gtcccgagga ggagctgagg gccgcggtgc
361 tgcagctgcg cgagaccgtc gtgcagcaga aggagacgct gggcgcgcag cgcgaggcca
421 tccgcgagct cacgggcaag ctagcgcgct gcgaggggct ggcgggcggc aaggcgcgcg
481 gcgcgggggc cacgggcaag gacactatgg gcgacctgcc gcgggacccc ggccacgtcg
541 tggagcagct cagccgctcg ctgcagaccc tcaaggaccg cctggagagc ctcgagcacc
601 agctcagagc aaacgtgtcc aatgctgggc tgcccggcga cttccgcgag gtgctccagc
661 agcggctggg ggagctggag aggcagcttc tgcgcaaggt ggcagagctg gaggacgaga
721 agtccctgct gcacaatgag acctcggctc accggcagaa gaccgagagc accctgaacg
781 cgctgctgca gagggtcacc gagctggagc gaggcaatag cgcctttaag tcaccagatg
841 cgttcaaggt gtccctccca ctccgcacaa actacctata cggcaagatc aagaagacgc
901 tgcctgagct gtacgccttc accatctgcc tgtggctgcg gtccagcgcc tcaccaggca
961 ttggcacccc cttctcctat gcggtgccag ggcaggccaa cgagatcgtg ctgatcgagt
1021 ggggcaacaa ccccatcgag ctgctcatca acgacaaggt tgcgcagctg cccctgtttg
1081 tcagtgacgg caagtggcac cacatctgtg tcacctggac gacacgggat ggcatgtggg
1141 aggcattcca ggacggagag aagctgggca ctggggagaa cctggccccc tggcacccca
1201 tcaagcccgg gggcgtgctg atccttggac aagagcagga caccgtgggg ggtaggtttg
1261 atgccactca ggcatttgtc ggggagctca gccagttcaa catatgggac cgcgtccttc
1321 gcgcacaaga aattgtcaac atcgccaact gctccacaaa catgccgggc aacatcatcc
1381 cgtgggtgga caataacgtc gatgtgttcg gaggggcctc caagtggccc gtggagacgt
1441 gtgaggagcg tctccttgac ttgtagccgc cttctcctct gtccaggagg ccgggatcag
1501 gctgttgcca tggaagttca gggccataga ctgccccact taaactcttg tcagtctggg
1561 ctcagggttc ccagagctca ttccccagga atctctaaga ccagggctgg ggcagtgtct
1621 gtcactggct tgtttgttcc ctaccaatat tctgttgctg tttgaagtag tgccagggtc
1681 ccctgggaag atgcccccaa gacacctgcc ccaagtgggt ggatatctgc cttcctgctg
1741 caagtggagg caggtccagc agcccctctt cagagcccct gtaaatgcta tcgcagcctg
1801 agtcctgccg ccttccagtt ccttggtgtc ccgtgcaccc cttctgtctg tcccctttca
1861 tggctgtgca gccgtcccgc tggagtggcc atgtcccttg tgcattgagt gcatccccgc
1921 tggtgactaa gctcgcagca agcggctacc ccccgatctg caaaaaggcc tctccctttg
1981 tgttctatac attgtgaatc ttcccgtctg aagaacgccc agcctgccca gacaaagccc
2041 cgccttcccc aaagcagagg ggctgtctgt gtctccagaa aggggacatc gggggggagg
2101 ggggctcaga aaggagaagg gctgtgatct ccggtccctt cccccatcat ccttccttag
2161 actgatgctt tgactgaatc atcactagct atggcattaa aaggcctctc ttctcatctg
2221 gtgccaaagg ttccgttgca gctttttaca accatccggt gtggtttgga ggttttgttt
2281 tttttttttc ccaacagaaa agaacagcca ttagaagaag gctcccattt tttgatgttc
2341 cgccccactg tgaagagtgt gctcgtttta aattcatgtt gatttttgta agcactggac
2401 tgttttcatc aagtatttcc ctacagaact cctcaagaaa acagagatca tttggctaga
2461 gattgtttga gtgactccaa gctactcact gtattggacg ggagtagtaa tttattttaa
2521 agataaagtg actaagtggg gaaatttata aagctaaata ttatatattt tatttttcat
2581 acatgtttga agtgcaaatt tgtggatatt ccatttgtag gaccaagtcg acatgcccat
2641 cctgacattg tatgctacga gaactttttt gatgatggaa tttcgattaa agtgcactga
2701 aagatgaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//