LOCUS BC035320 2085 bp mRNA linear HTC 13-APR-2006
DEFINITION Homo sapiens translin-associated factor X interacting protein 1,
mRNA (cDNA clone IMAGE:4753404), with apparent retained intron.
ACCESSION BC035320
VERSION BC035320.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2085)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2085)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: James Cleaver, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 28 Row: p Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8923845
This clone has the following problem: retained intron
This clone grew slowly and was rescued by PCR.
FEATURES Location/Qualifiers
source 1..2085
/db_xref="H-InvDB:HIT000051369"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4753404"
/tissue_type="Skin, squamous cell carcinoma"
/clone_lib="NCI_CGAP_Skn4"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6.1"
BASE COUNT 575 a 526 c 609 g 375 t
ORIGIN
1 tcatggcctg ccagcagtcg cggtaccaca gcttctcgtc cgcgtcgaga ttacagccac
61 ggccttcagg agtgaccata gacgaatcct ttctcacaga agacaagagc acccagaatc
121 gcaagcttct tcagaaacga aggacgctgg tgaccaaact gaggaagaac ttggctgagg
181 agtacctgca ctacctcagt gagcgagatg cctgtaagat cctcatcgca gacctgaatg
241 agctgcggta ccagcgggag gacatgtcat tagcccagtc gccaggcatc tggggggagg
301 accctgtgaa gttaaccctg gcccttaaga tgacccggca agacctgacc cgcacgcaga
361 tggaactcaa caacatgaag gccaactttg gagatgtggt ccccaggagg gactttgaaa
421 tgcaggagaa gaccaacaag gatcttcagg agcaggtgct ggcaggcagg cagggccagg
481 agggtaggac ggggtctcac aggtgggggg ccagggccaa tgtccttgcc cacagctgga
541 caccctgaga gccagctacg aggaggttcg caaggagcat gagatcctca tgcagctgca
601 catgagcacg ctgaaggaac gggaccaatt cttctctgag ctgcaggaga tccagcgcac
661 ttccacgccg cggcctgact ggaccaagtg caaaggtgag ggcagccggc agggccccag
721 gtcctgctta catgtgggcc cagactccag ctccctctcc ccacatgcag atgtggtggc
781 tgggggccca gagcgctggc agatgctggc tgagggcaag aacagcgacc agctggtgga
841 cgtgctcctg gaagagattg gttcggggct gctgcgggag aaagacttct tccctggtct
901 gggctatggg gaagccatcc ctgcttttct tcggtttgat ggcctcgtgg agaacaagaa
961 gccaagcaag aaggacgtgg tcaacctcct caaggatgcc tggaaggaac gtcttgctga
1021 ggagcagaaa gagacgttcc cagatttctt cttcaatttc ctggagcatc gctttgggcc
1081 cagtgatgcc atggcctggg cttatactat ttttgaaaat atcaagatct tccactccaa
1141 cgaggttatg agtcagttct atgcagtctt gatgggaaag cggagtgaga atgtgtatgt
1201 cacccagaag gagacagtag cccagctgct gaaggagatg acaaatgctg acagtcagaa
1261 cgaggggcta ctaaccatgg agcagttcaa cactgtcctc aagagtacct tccctctcaa
1321 gacagaagag caaatccagg agctgatgga ggcagggggc tggcatccca gcagcagcaa
1381 tgcagacttg ctcaactacc gctcactgtt tatggaggat gaggagggcc agagtgagcc
1441 ctttgtgcaa aaactctggg aacaatacat ggatgagaag gacgagtact tacagcagct
1501 aaagcaggag cttggcatag aactgtgagt gaccctcatc cataggcgag tcccacaggc
1561 tgggcccctg aagcccctgg gtctccctgt gcaccatgca ccatccactg ctcagcccag
1621 cacagaggag ggcacctggg agtctggggc acggagagga ggggtcaggg cctgtcactc
1681 tctttcctgt ggggcagcca tgaggaagtg actctgccca agctgcgagg gggcctgatg
1741 accatcgacc ccagcctgga caagcagaca gtgaacacct acatgagcca ggccttccag
1801 ctccctgagt cggaaatgcc agaggagggt gacgagaagg aagaagccgt ggtggaaatc
1861 ctccagactg ccctggagcg gcttcaggtg attgacatca ggcgtgtggg acctcgagag
1921 ccagagcctg caagctagga acttgtgggc agcctgcgta ctccagtcct gctaacccct
1981 agcttttaat ataaaagtgt ttgtctgaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2041 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
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