LOCUS BC035310 1116 bp mRNA linear HUM 01-SEP-2006
DEFINITION Homo sapiens transmembrane protein 171, mRNA (cDNA clone MGC:21769
IMAGE:4746772), complete cds.
ACCESSION BC035310
VERSION BC035310.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1116)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1116)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: James Cleaver, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 28 Row: m Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42476211
This clone grew slowly and was rescued by PCR.
FEATURES Location/Qualifiers
source 1..1116
/db_xref="H-InvDB:HIT000051365"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21769 IMAGE:4746772"
/tissue_type="Skin, normal"
/clone_lib="NCI_CGAP_Skn3"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6.1"
gene 1..1116
/gene="TMEM171"
/gene_synonym="PRP2"
/db_xref="GeneID:134285"
/db_xref="HGNC:HGNC:27031"
CDS 46..1017
/gene="TMEM171"
/gene_synonym="PRP2"
/codon_start=1
/product="transmembrane protein 171"
/protein_id="AAH35310.1"
/db_xref="GeneID:134285"
/db_xref="HGNC:HGNC:27031"
/translation="MSPAAAAEPDGDQQDRHVSKLIFCFFVFGAVLLCVGVLLSIFGF
QACQYKPLPDCPMVLKVAGPACAVVGLGAVILARSRAQLQLRAGLQRGQQMDPDRAFI
CGESRQFAQCLIFGFLFLTSGMLISVLGIWVPGCGSNWAQEPLNETDTGDSEPRMCGF
LSLQIMGPLIVLVGLCFFVVAHVKKRNTLNAGQDASEREEGQIQIMEPVQVTVGDSVI
IFPPPPPPYFPESSASAVAESPGTNSLLPNENPPSYYSIFNYGTPTSEGAASERDCES
IYTISGTNSSSEASHTPHLPSELPPRYEEKENAAATFLPLSSEPSSP"
BASE COUNT 259 a 295 c 270 g 292 t
ORIGIN
1 gaaaacacat cccaccctgc ctccgggaag gggcctctcc tggacatgtc tcctgcagct
61 gctgctgagc cagatgggga ccagcaggac agacacgtca gcaaactcat cttctgcttc
121 tttgtcttcg gcgccgtctt gttgtgtgtg ggagtcctgc tctccatctt tgggttccag
181 gcatgccaat ataagcccct cccagactgc cccatggtgc tcaaggtggc ggggcctgca
241 tgtgccgtgg ttgggcttgg ggctgtgatc ctggcccgct cccgggcgca acttcagctc
301 cgtgcagggc tgcagagagg tcagcagatg gaccccgacc gagccttcat ctgtggagag
361 agccgccagt ttgcccagtg ccttatcttt gggtttctgt tcttgacaag cggcatgctc
421 atcagcgtcc tgggcatttg ggtccctgga tgtggctcca actgggcgca ggaaccgcta
481 aacgagacag acactggcga ctcagagccc cggatgtgtg ggttcctttc tctgcagatc
541 atggggccct tgattgtgct tgtgggattg tgtttcttcg tggttgccca tgttaagaag
601 agaaacacgc tgaatgctgg ccaggatgcc tctgagagag aagagggaca gatccagatt
661 atggagcctg tccaggtcac tgtaggtgac tcggtaataa tatttccacc ccctccacca
721 ccttactttc ctgaatcttc agcttctgcg gtcgctgaga gtcctggaac taacagtctg
781 cttccgaatg aaaacccccc ttcatattac agtattttca actatgggac cccaacttca
841 gagggtgcag cctctgaaag agactgtgaa tctatatata ccatttctgg gacgaattca
901 tcttctgagg cctcacacac tccacatctt ccatctgaat tgcctcctag atatgaagaa
961 aaagaaaatg ctgcagctac attcttgcct ctatcttctg agccttcctc accgtaaact
1021 atggactcta gttcagtttt atatgcaatg gatcactatt ttatttaatt ttttttaaat
1081 aaaaaataca atagcaaaaa aaaaaaaaaa aaaaaa
//