LOCUS BC035251 3493 bp mRNA linear HUM 02-DEC-2006 DEFINITION Homo sapiens coiled-coil domain containing 40, mRNA (cDNA clone MGC:41805 IMAGE:4838111), complete cds. ACCESSION BC035251 VERSION BC035251.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3493) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3493) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 72 Row: m Column: 16 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis, GenomeScan gene prediction. FEATURES Location/Qualifiers source 1..3493 /db_xref="H-InvDB:HIT000093796" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:41805 IMAGE:4838111" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3493 /gene="CCDC40" /gene_synonym="FLJ20753" /gene_synonym="FLJ32021" /gene_synonym="KIAA1640" /db_xref="GeneID:55036" /db_xref="HGNC:HGNC:26090" CDS 25..3120 /gene="CCDC40" /gene_synonym="FLJ20753" /gene_synonym="FLJ32021" /gene_synonym="KIAA1640" /codon_start=1 /product="coiled-coil domain containing 40" /protein_id="AAH35251.1" /db_xref="GeneID:55036" /db_xref="HGNC:HGNC:26090" /translation="MAEPGGAAGRSHPEDGSASEGEKEGNNESHMVSPPEKDDGQKGE EAVGSTEHPEEVTTQAEAAIEEGEVETEGEAAVEGEEEAVSYGDAESEEEYYYTETSS PEGQISAADTTYPYFSPPQELPGEEAYDSVSGEAGLQGFQQEATGPPESRERRVTSPE PSHGVLGPSEQMGQVTSGPAVGRLTGSTEEPQGQVLPMGVQHRFRLSHGSDIESSDLE EFVSQEPVIPPGVPDAHPREGDLPVFQDQIQQPSTEEGAMAERVESEGSDEEAEDEGS QLVVLDPDHPLMVRFQAALKNYLNRQIEKLKLDLQELVVATKQSRAQRQELGVNLYEV QQHLVHLQKLLEKSHDRHAMASSERRQREEELQAARALYTKTCAAANEERKKLAALQT EMENLALHLFYMQNIDQDMRDDIRVMTQVVKKAETERIRAEIEKKKQDLYVDQLTTRA QQLEEDIALFEAQYLAQAEDTRILRKAVSEACTEIDAISVEKRRIMQQWASSLVGMKH RDEAHRAVLEALRGCQHQAKSTDGEIEAYKKSIMKEEEKNEKLAGILNRTETEATLLQ KLTTQCLTKQVALQSQFNTYRLTLQDTEDALSQDQLEQMILTEELQAIRQAIQGELEL RRKTDAAIREKLQEHMTSNKTTKYFNQLILRLQKEKTNMMTHLSKINGDIAQTTLDIT HTSSRLDAHQKTLVELDQDVKKVNELITNSQSEISRRTILIERKQGLINFLNKQLERM VSELGGEEVGPLELEIKRLSKLIDEHDGKAVQAQVTWLRLQQEMVKVTQEQEEQLASL DASKKELHIMEQKKLRVGSKIEQEKKEQKEIEHHMKDLDNDLKKLNMLMNKNRCSSEE LEQNNRVTENEFVRSLKASERETIKMQDKLNQLSEEKATLLNQLVEAEHQIMLWEKKI QLAKEMRSSVDSEIGQTEIRAMKGEIHRMKKYCRTTRDARRHVHEQHGTRAGTCTNNT GRAQARARTTRDARRHVHEQHGTRAGTCTNNTGRAQARARTTRDARRHVHEHRTHTAR A" BASE COUNT 1012 a 931 c 1061 g 489 t ORIGIN 1 ggcggcgtcg cctagcaacg ggaaatggcg gaaccgggcg gcgcggcggg ccggtcccat 61 ccggaagatg gatcggcttc tgagggagag aaggaaggga ataatgaaag ccacatggtg 121 tcaccaccag agaaggatga tggccagaaa ggtgaagaag ctgtcggtag cacagagcat 181 cctgaggaag tcacaaccca agcggaagct gcaattgaag agggggaggt cgagacagaa 241 ggggaagcag cagtggaagg ggaagaggag gctgtgtcct atggagatgc tgaaagcgaa 301 gaggaatatt actatacaga aacttcatcc ccggaagggc aaatcagtgc tgcagatacg 361 acttacccgt atttcagtcc tcctcaggaa ctgcctggag aggaggcata cgatagtgtt 421 agcggggagg ctggtctcca aggcttccag caagaggcca ccggtccacc agaatccaga 481 gaaaggaggg tcacctcccc agagccatcc cacggagtct taggcccgtc ggagcaaatg 541 ggccaggtca cctctgggcc agcagtgggc agattgacag gatccacaga ggagccccag 601 gggcaggtgc tcccaatggg cgtccagcac cgcttccggc tgagccacgg gagcgacatc 661 gagtcctcag acctggagga gttcgtctcg caggagccag tgatcccccc aggggtgccc 721 gatgcccacc ccagggaagg agacctgcca gtgttccagg accagatcca gcagcccagc 781 accgaggagg gggccatggc agagagagtg gagtccgagg ggagtgacga ggaagcagaa 841 gacgaagggt cccagctggt ggttttggac ccagaccacc ccctgatggt aagattccag 901 gctgccctga agaactacct gaaccgacag atcgaaaagt tgaagctgga cctccaagag 961 ctggttgtgg ctaccaagca gagccgagcc cagcggcagg agctgggggt gaatctctat 1021 gaggtgcagc agcacctggt acacctgcag aagctgctgg agaagagtca cgaccgccac 1081 gcaatggcct cgagcgagcg caggcagagg gaggaggagc tgcaggccgc ccgcgctctc 1141 tacaccaaga cctgcgcagc cgccaacgag gagcgcaaaa agttggcggc tctgcagact 1201 gagatggaga acttggccct gcatctcttc tacatgcaga acatcgacca ggacatgcgt 1261 gacgacatcc gcgtgatgac acaagtggta aagaaggccg agacggagag gatccgggca 1321 gaaatcgaga agaaaaagca ggacctgtat gtggaccagc tcaccactcg agcccagcaa 1381 ctggaagaag acattgccct gtttgaggct cagtacttgg cccaagctga ggacacccgg 1441 attttaagga aagcagtgag tgaggcctgc accgagatcg acgccatcag cgtggagaag 1501 aggcgcatca tgcagcaatg ggccagcagc ctggtgggca tgaagcaccg cgacgaggcg 1561 cacagggcgg tgctggaggc gctcagagga tgccagcatc aagccaaatc caccgacggc 1621 gagattgagg cctataagaa atccatcatg aaggaggaag aaaagaacga gaagctggcg 1681 ggcatcctga accggacaga gacggaagcc acactgctgc agaagctcac cacccagtgc 1741 ctgaccaagc aggtggccct gcagagccag ttcaatacct acaggctcac cctgcaggac 1801 acagaggatg ccctcagcca ggaccagctg gaacaaatga tactcacgga ggagttgcag 1861 gccatccgcc aagccatcca gggcgagctg gagctcagga ggaagacgga tgcggccatc 1921 cgggagaagc tgcaggagca catgacctcc aacaagacca ccaaatactt caaccagctc 1981 atcctgaggc tgcagaagga gaagaccaac atgatgacac atctttccaa aatcaacggt 2041 gacattgccc agaccaccct ggacatcaca cacaccagca gcaggctgga cgcacaccag 2101 aagaccctgg tggagctgga ccaggacgtg aagaaagtca acgagctcat caccaacagc 2161 cagagcgaga tctcccggcg cacgatcctg atcgagagga agcaagggct catcaacttc 2221 ctcaacaagc agctggagcg gatggtctcc gagctggggg gggaagaagt ggggcccctg 2281 gagcttgaaa tcaaaaggct gagcaagctg atcgacgagc acgatggcaa ggcggtccag 2341 gcccaggtga cctggctgcg cctgcagcag gagatggtca aggtgacaca ggagcaggag 2401 gagcagctgg cctccctgga cgcatccaag aaggagctcc acatcatgga gcagaagaaa 2461 ctacgagtag gaagcaagat tgagcaggag aagaaggagc agaaggagat cgagcaccac 2521 atgaaggacc tggacaacga cctgaagaag ctcaacatgt tgatgaataa aaaccggtgc 2581 agctcggagg agctggagca gaacaaccgg gtgacagaga atgagttcgt gcgctcgctg 2641 aaggcctctg agagggagac catcaagatg caggacaagc tgaaccagct cagcgaggag 2701 aaggcgaccc tcctgaatca actggtggaa gcagaacacc agattatgct ttgggagaaa 2761 aaaatccaac tggcaaaaga gatgcgttcc tcagtggatt ccgagatcgg ccagacggag 2821 atccgggcca tgaagggcga gatccacagg atgaagaaat attgcagaac aacacgggac 2881 gcgcgcaggc acgtgcacga acaacacggg acgcgcgcag gcacgtgcac gaacaacacg 2941 ggacgcgcgc aggcacgtgc acgaacaaca cgggacgcgc gcaggcacgt gcacgaacaa 3001 cacgggacgc gcgcaggcac gtgcacgaac aacacgggac gcgcgcaggc acgtgcacga 3061 acaacacggg acgcgcgcag gcacgtgcac gaacacagga cacacacagc acgtgcatga 3121 acaacacagg acacacacaa gcacgtgcat gtcatctcac aaaacgctgt tttattccta 3181 ctccatgtaa tcacagcacg ctggtatttt taaatgccgg ttgtaaccct caaactttgt 3241 gaccctctaa cgtatcccac tctgagacag tctcacacca cagaagggct cagagagcac 3301 ccccatctca tccttcacag ccgcgttgtc tctccatggt cacaattaga tttcattgcc 3361 tttaaaaggc tggtaattaa attgcaagtg gtcatcaagc taaaggttca gggccttaag 3421 gataacagta agagcagttc ataaaataaa tgggcctcac tttcaccatg ccatgccaaa 3481 aaaaaaaaaa aaa //