LOCUS BC035048 1972 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens neurogenic differentiation 6, mRNA (cDNA clone
MGC:41788 IMAGE:5261681), complete cds.
ACCESSION BC035048
VERSION BC035048.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1972)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1972)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC035048.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 73 Row: e Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27475984.
FEATURES Location/Qualifiers
source 1..1972
/db_xref="H-InvDB:HIT000051316"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:41788 IMAGE:5261681"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1972
/gene="NEUROD6"
/gene_synonym="Atoh2"
/gene_synonym="Math-2"
/gene_synonym="NEX1M"
/db_xref="GeneID:63974"
/db_xref="HGNC:HGNC:13804"
CDS 156..1169
/gene="NEUROD6"
/gene_synonym="Atoh2"
/gene_synonym="Math-2"
/gene_synonym="NEX1M"
/codon_start=1
/product="neurogenic differentiation 6"
/protein_id="AAH35048.1"
/db_xref="GeneID:63974"
/db_xref="HGNC:HGNC:13804"
/translation="MLTLPFDESVVMPESQMCRKFSRECEDQKQIKKPESFSKQIVLR
GKSIKRAPGEETEKEEEEEDREEEDENGLPRRRGLRKKKTTKLRLERVKFRRQEANAR
ERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRIGKRPDLLT
FVQNLCKGLSQPTTNLVAGCLQLNARSFMMGQGGEAAHHTRSPYSTFYPPYHSPELTT
PPGHGTLDNSKSMKPYNYCSAYESFYESTSPECASPQFEGPLSPPPINYNGIFSLKQE
ETLDYGKNYNYGMHYCAVPPRGPLGQGAMFRLPTDSHFPYDLHLRSQSLTMQDELNAV
FHN"
BASE COUNT 652 a 375 c 393 g 552 t
ORIGIN
1 actttttaga gatcaatgag atagtgcaga tatacacaga tctagagact ccaggagacg
61 atgcgacact cagcctgaaa agatttggaa gacccaaaat gaaaactgat tattgaatga
121 aattaaaacc taaggtaatt taagattaga gaaccatgtt aacactaccg tttgatgagt
181 ctgttgtaat gccagaatcc cagatgtgca gaaagttttc tagagaatgc gaggaccaga
241 agcaaattaa gaagccagaa agcttttcca aacagattgt ccttcgagga aagagcatca
301 aaagggcccc tggagaagaa accgagaaag aagaagagga ggaagacagg gaagaggaag
361 atgaaaatgg gttgcctaga aggaggggtc ttaggaaaaa aaagacaaca aagctgcgat
421 tggaaagggt caagttcagg agacaggaag cgaacgcgcg cgagaggaac aggatgcacg
481 gcctcaacga cgctctggac aacttaagaa aagtggtccc ctgttattct aaaacccaga
541 aactgtccaa aatagagact ttacgactgg ccaaaaacta catctgggca ctttctgaaa
601 ttctgagaat cggcaagaga ccagatctgc tcacattcgt ccaaaactta tgcaaaggtc
661 tttcccagcc aactacaaac ttggtggcag gctgcttgca gctcaacgcc aggagtttca
721 tgatgggtca gggtggggag gctgcacacc acacaaggtc accctactct accttctacc
781 caccctacca cagccctgag ctcaccactc ccccagggca tgggactctt gataattcca
841 agtccatgaa accctacaat tattgcagtg cgtatgaatc cttctatgaa agtacttccc
901 ctgagtgtgc cagccctcag tttgaaggtc ccttaagtcc tcccccaatt aactataatg
961 ggatattttc cctgaagcaa gaagaaacct tggactatgg taaaaattac aattacggca
1021 tgcattactg tgcagtgcca cccaggggtc cccttgggca gggtgccatg ttcaggttgc
1081 ccaccgacag ccacttccct tacgacttac atctgcgcag ccaatctctc acaatgcaag
1141 atgaattaaa tgcagttttt cataattaat gaggaaaatg aaaataaaca gtggtcattc
1201 acctcccctg tctaattaag acaaagcaga tgcttgtggg ctgagtaatt ggcacaactc
1261 tatctaaggt gtttactagt ttctgaagtg tgtttcaact attgtgagaa ttttctatgt
1321 aataataaat ctcttttcgt atgagaactt cttttccttt ccttttgtct gtgaagcact
1381 gtgattctgt ttctactgga aagatttttt tctttttaat tttcttttaa acttatttaa
1441 tttgtttgaa caaggtgtct aagaatatac tgttgaataa agacatgcac acagcataat
1501 tcaatgtcta ttttggttgt acagtaatta taaaatgcat gttattaaaa caagatgagt
1561 aaaatgatgt gtttataatt attaggaatt atatattatg tatcttttaa aaattgaaat
1621 tttaaaatat ggagaatatc actaagctga caatgatatt gggagatgaa tttgcaacaa
1681 tataaaaagc tatgcaattt tctttttatt aaggatgaat ctaaatgcat tcaattggta
1741 actattcctc ttcaagtatt tgcagatggg gcaacatgat atttgggtag ctgatgtcat
1801 aattcgggga caattatctc aatcatcaag aaaaaaattt cagcacttgt tttgtattat
1861 tcagaaatta actgtacagg tttgttatca caatgtataa ttgtgttttt ccaccccaca
1921 tttttaaggc aattaaatat agatatttcc actcgcaaaa aaaaaaaaaa aa
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