LOCUS       BC035025                4517 bp    mRNA    linear   HUM 28-JUL-2005
DEFINITION  Homo sapiens Alstrom syndrome 1, mRNA (cDNA clone IMAGE:4827788),
            partial cds.
ACCESSION   BC035025
VERSION     BC035025.2
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4517)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 4517)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (31-JUL-2002) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     On Sep 16, 2003 this sequence version replaced BC035025.1.
            Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
            cDNA Library Preparation: Michael J. Brownstein (NHGRI) &  Shiraki
            Toshiyuki and Piero Carninci (RIKEN)
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Institute for Systems Biology
            http://www.systemsbiology.org
            contact: amadan@systemsbiology.org
            Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
            Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 47 Row: a Column: 2.
FEATURES             Location/Qualifiers
     source          1..4517
                     /db_xref="H-InvDB:HIT000093642"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="IMAGE:4827788"
                     /tissue_type="Testis"
                     /clone_lib="NIH_MGC_97"
                     /lab_host="DH10B"
                     /note="Vector: pBluescriptR"
     gene            <1..4517
                     /gene="ALMS1"
                     /gene_synonym="ALSS"
                     /gene_synonym="KIAA0328"
                     /db_xref="GeneID:7840"
                     /db_xref="MIM:606844"
     CDS             <1..4382
                     /gene="ALMS1"
                     /gene_synonym="ALSS"
                     /gene_synonym="KIAA0328"
                     /codon_start=3
                     /product="ALMS1 protein"
                     /protein_id="AAH35025.1"
                     /db_xref="GeneID:7840"
                     /db_xref="MIM:606844"
                     /translation="NKIIIPMMTVIKSDSSSDASDGNGSCSWDSNLPESLESVSDVLL
                     NFFPYVSPKTSITDSREEEGVSESEDGGGSSVDSLAAHVKNLLQCESSLNHAKEILRN
                     AEEEESRVRAHAWNMKFNLAHDCGYSISELNEDDRRKVEEIKAELFGHGRTTDLSKGL
                     QSPRGMGCKPEAVCNHIIIESHEKGCFRTLTSEHPQLDRHPCAFRSAGPSEMTRGRQN
                     PSSCRAKHVNLSASLDQNNSHFKVWNSLQLKSHSPFQNFIPDEFKISKGLRMPFHEKM
                     DPWLSELVEPAFVPPKEVDFHSSSQMPSPEPMKKFTTSITFSSHRHSKCISNSSVVKV
                     GVTEGSQCTGASVGVFNSHFTEEQNPPRDLKQKTSSPSSFKMHSNSQDKEVTILAEGR
                     RQSQKLPVDFERSFQEEKPLERSDFTGSHSEPSTRANCSNFKEIQISDNHTLISMGRP
                     SSTLGVNRSSSRLGVKEKNVTITPDLPSCIFLEQRELFEQSKAPRADDHVRKHHSPSP
                     QHQDYVAPDLPSCIFLEQRELFEQCKAPYVDHQMRENHSPLPQGQDSIASDLPSPISL
                     EQCQSKAPGVDDQMNKHHFPLPQGQDCVVEKNNQHKPKSHISNINVEAKFNTVVSQSA
                     PNHCTLAASASTPPSNRKALSCVHITLCPKTSSKLDSGTLDERFHSLDAASKARMNSE
                     FNFDLHTVSSRSLEPTSKLLTSKPVAQDQESLGFLGPKSSLDFQVVQPSLPDSNTITQ
                     DLKTIPSQNSQIVTSRQIQVNISDFEGHSNPEGTPVFADRLPEKMKTPLSAFSEKLSS
                     DAVTQITTESPEKTLFSSEIFINAEDRGHEIIEPGNQKLRKAPVKFASSSSVQQVTFS
                     RGTDGQPLLLPYKPSGSTKMYYVPQLRQIPPSPDSKSDTTVESSHSGSNDAIAPDFPA
                     QVLGTRDDDLSATVNIKHKEGIYSKRVVTKASLPVGEKPLQNENADASVQVLITGDEN
                     LSDKKQQEIHSTRAVTEAAQAKEKESLQKDTADSSAAAAAEHSALVGDPEMKNLPDTK
                     AITQKEEIHRKKTVPEEAWPNNKESLQINIEESECHSEFENTTRSVFRSAKFYIHHPV
                     HLPSDQDICHESLGKSVFMRHSWKDFFQHHPDKHREHMCLPLPYQNMDKTKTDYTRIK
                     SLSINVNLGNKEVMDTTKSQVRDYPKHNGQISDPQRDQKVTPEQTTQHTVSLNELWNK
                     YRERQRQQRQPELGDRKELSLVDRLDRLAKILQNPITHSLQVSESTHDDSRGERSVKE
                     WSGRQQQRNKLQKKKRFKSLEKSHKNTGELKKSKVLSHHRAGRSNQIKIEQIKFDKYI
                     LSKQPGFNYISNTSSDCRPSEESELLTDTTTNILSGTTSTVESDILTQTDREVALHER
                     SSSVSTIDTARLIQAFGHERVCLSPRRIKLYSSITNQQRRYLEKRSKHSKKVLNTGHP
                     LVTSEHTRRRHIQVHGYRFHLAM"
BASE COUNT         1494 a          980 c          899 g         1144 t
ORIGIN      
        1 ggaataaaat tattatccct atgatgactg tcataaaaag tgattcaagt agtgatgcca
       61 gtgatggaaa tggttcctgc tcgtgggaca gtaatttacc agagtctttg gaatcagttt
      121 ctgatgttct tctaaacttc tttccatatg tttcacccaa gacaagtata acagatagca
      181 gggaggaaga gggtgtgtca gagagtgagg atggtggtgg tagcagtgta gattcactgg
      241 ctgcacatgt gaaaaacctt ctgcaatgtg aatcctcact gaatcatgct aaagaaatac
      301 tcagaaatgc agaggaagag gaaagccggg tacgagcaca tgcctggaat atgaagttca
      361 atttagcaca tgattgtgga tactccattt cagaattaaa tgaagatgac aggaggaaag
      421 tagaagagat caaggcagag ttatttggtc atggaagaac aactgacttg tccaagggtt
      481 tacagagtcc acggggaatg ggatgcaagc cagaagctgt atgtaatcac attattattg
      541 agagccatga aaagggatgt ttccggactc taacttctga acatccacaa ctagatagac
      601 acccttgtgc tttcagatct gctggaccct cagaaatgac cagaggacgg cagaacccat
      661 catcatgcag agccaagcat gtcaaccttt ctgcatcctt agaccagaac aactcccatt
      721 tcaaagtttg gaattccttg cagttaaaaa gtcattcccc atttcagaac tttatacctg
      781 atgaattcaa aattagcaaa ggtcttcgaa tgccattcca tgaaaagatg gacccttggc
      841 tgtcagaatt agtagaacct gcttttgtgc cacctaaaga agtggatttt cattcttcat
      901 cacaaatgcc gtccccagaa cccatgaaaa agtttactac ctccatcact ttttcatctc
      961 accgacattc taaatgcatt tccaattcct ctgttgttaa ggttggtgtt actgaaggta
     1021 gccagtgtac tggagcatct gtgggggtat ttaattctca tttcactgaa gaacaaaatc
     1081 ctcccagaga tcttaaacag aaaacctctt ccccttcatc atttaaaatg catagtaatt
     1141 cacaagataa agaagtgact attttagcag aaggtagaag gcaaagccaa aaattacctg
     1201 ttgattttga gcgttctttt caagaagaaa aacccttaga aagatcagat tttacaggca
     1261 gtcattctga gcccagtacc agggcaaatt gtagcaattt caaggaaatt cagatttctg
     1321 ataaccatac ccttattagc atgggcagac caagttccac cctaggagta aacagatcga
     1381 gttccagact aggagtaaaa gagaagaatg taactataac tccagatctt ccttcttgca
     1441 tttttcttga acaacgagag ctctttgaac aaagcaaagc cccacgtgca gatgaccatg
     1501 tgaggaaaca ccattctccc tctcctcaac atcaggatta tgtagctcca gaccttcctt
     1561 cttgcatttt tcttgaacaa cgagaactct ttgaacagtg caaagcccca tatgtagatc
     1621 atcaaatgag agaaaaccat tctccccttc ctcaaggtca ggattctata gcttcagacc
     1681 ttccgtctcc catttctctt gaacaatgcc aaagcaaagc gccaggtgta gatgaccaaa
     1741 tgaataaaca ccattttccc cttcctcaag gtcaggattg tgtagtggaa aagaataatc
     1801 aacataagcc taaatcacac atttctaata taaatgttga agccaagttc aatactgtgg
     1861 tctcccagtc agccccaaat cactgtacat tagcagcatc tgcatctact cctccttcaa
     1921 atagaaaagc actttcttgt gttcatataa ctctttgtcc caagacttct tccaagttgg
     1981 atagtggaac tttagatgaa agattccatt cattggatgc tgcttctaaa gcgaggatga
     2041 atagtgagtt taactttgac ttacatactg tatcttcgag atcactggaa ccaacctcca
     2101 aattattgac cagtaaacct gtagcacagg atcaagaatc tttaggtttt ctaggaccta
     2161 aatcttcact ggatttccaa gtcgtacagc cttctcttcc agacagtaac actattactc
     2221 aggacttgaa aaccatacct tctcagaata gccagatagt aacctccagg caaatacaag
     2281 tgaacatttc agatttcgaa ggacattcca atccagaggg gaccccagta tttgcagatc
     2341 gattaccaga gaagatgaag accccacttt ctgctttctc tgaaaaattg tcatctgatg
     2401 cagtcactca gataacaaca gaaagtccag aaaagaccct attttcatct gagattttta
     2461 ttaatgctga agatcgtgga catgaaatta tagagcctgg taaccagaag ctacgcaaag
     2521 ctcctgtcaa gtttgcctca tcatcttcag tccaacaggt tactttttct cgcggcacag
     2581 atggccagcc tttattattg ccatataagc cttctggtag taccaagatg tattatgttc
     2641 cacaattaag acaaattcct ccatctccgg attccaaatc agataccacc gttgaaagct
     2701 cccattcagg atccaatgat gccattgctc cagacttccc agctcaggtg ctaggcacaa
     2761 gagatgatga cctctcagcc actgttaaca ttaaacataa agaaggaatc tacagtaaga
     2821 gggtagtgac taaggcatcc ttgccagtgg gagaaaaacc cttgcagaat gaaaatgcag
     2881 atgcctcagt tcaagtgcta atcactgggg atgagaacct ctcagacaaa aaacagcaag
     2941 agattcacag tacaagggca gtgactgagg ctgcccaggc taaagaaaaa gaatctttgc
     3001 agaaagatac tgcagattcc agtgctgctg ctgctgcaga gcactcagct ctagtaggag
     3061 acccagaaat gaagaacttg ccagacacta aagccattac acagaaagag gagatccata
     3121 ggaagaagac agttcccgag gaagcctggc caaacaataa agaatcccta cagatcaata
     3181 ttgaagagtc cgaatgtcat tcagaatttg aaaatactac ccgttctgtc ttcaggtcag
     3241 caaagtttta cattcatcat cccgtacacc taccaagtga tcaagatatt tgccatgaat
     3301 ctttgggaaa gagtgttttc atgagacatt cttggaaaga tttctttcag catcatccag
     3361 acaaacatag agaacacatg tgtcttcctc ttccttatca aaacatggac aagactaaga
     3421 cagattatac cagaataaag agcctcagca tcaatgtgaa tttgggaaac aaagaagtga
     3481 tggatactac taaaagtcaa gttagagatt atccaaaaca taatggacaa attagtgatc
     3541 cacaaaggga tcagaaggtc accccagagc aaacaactca gcacactgtg agtttgaatg
     3601 aactgtggaa caagtatcgg gagcgacaga ggcaacagag acagcctgag ttgggtgaca
     3661 ggaaagaact gtccttggtg gaccgacttg atcgtttggc taaaattctt cagaatccaa
     3721 tcacacattc tctccaggtc tcagaaagta cacatgatga tagcagaggg gaacgaagtg
     3781 tgaaggaatg gagtggtaga caacagcaga gaaataagct tcagaaaaag aagcggttta
     3841 aaagcctaga gaaaagccat aaaaatacag gcgagcttaa aaaaagcaag gtgctttctc
     3901 atcatcgagc tgggaggtct aatcaaatta aaattgaaca gattaaattt gataaatata
     3961 ttctgagtaa acagccaggt tttaattata taagcaacac ttcttcggat tgtcggccct
     4021 cagaggagag tgagctgctc acagatacta ccaccaacat cctttccggc accacttcta
     4081 ctgtcgaatc agatatattg acccaaacag atagagaggt ggctctgcac gaaaggagta
     4141 gctctgtttc cactattgac actgcccggc tgattcaagc ttttggccat gaaagagtat
     4201 gcttgtcacc cagacgaatt aaattatata gcagcatcac caaccaacag aggagatacc
     4261 ttgagaagcg gagcaaacac agcaagaaag tgctgaatac aggtcatccc ctagtgactt
     4321 ctgagcacac cagaaggaga cacatccagg tacatggcta cagattccat ctggcaatgt
     4381 gactgccctc ttcatggact ttttagttaa gctttgcaca caggtgaaaa aaacaagcca
     4441 tttgcccttt cctctctata ccatttctta ccaactggaa aagagtgaga aagtgtagta
     4501 caaaaaaaaa aaaaaaa
//