LOCUS BC035013 4279 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens RAB11 family interacting protein 5 (class I), mRNA (cDNA clone MGC:33435 IMAGE:5269818), complete cds. ACCESSION BC035013 VERSION BC035013.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4279) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4279) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 47 Row: p Column: 17. FEATURES Location/Qualifiers source 1..4279 /db_xref="H-InvDB:HIT000051301" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:33435 IMAGE:5269818" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..4279 /gene="RAB11FIP5" /gene_synonym="DKFZP434H018" /gene_synonym="GAF1" /gene_synonym="KIAA0857" /gene_synonym="pp75" /gene_synonym="RIP11" /db_xref="GeneID:26056" /db_xref="HGNC:HGNC:24845" /db_xref="MIM:605536" CDS 168..2126 /gene="RAB11FIP5" /gene_synonym="DKFZP434H018" /gene_synonym="GAF1" /gene_synonym="KIAA0857" /gene_synonym="pp75" /gene_synonym="RIP11" /codon_start=1 /product="RAB11 family interacting protein 5 (class I)" /protein_id="AAH35013.1" /db_xref="GeneID:26056" /db_xref="HGNC:HGNC:24845" /db_xref="MIM:605536" /translation="MALVRGAEPAAGPSRWLPTHVQVTVLRARGLRGKSSGAGSTSDA YTVIQVGREKYSTSVVEKTHGCPEWREECSFELPPGALDGLLRAQEADAGPAPWAASS AAACELVLTTMHRSLIGVDKFLGQATVALDEVFGAGRAQHTQWYKLHSKPGKKEKERG EIEVTIQFTRNNLSAMFDLSMKDKPRSPFSKIRDKMKGKKKYDLESASAILPSSAIED PDLGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSASGSLAYQGPGAELLTR SPSRSSWLSTEGGRDSAQSPKLFTHKRTYSDEANQMRVAPPRALLDLQGHLDAASRSS LCVNGSHIYNEEPQGPVRHRSSISGSLPSSGSLQAVSSRFSEEGPRSTDDTWPRGSRS NSSSEAVLGQEELSAQAKVLAPGASHPGEEEGARLPEGKPVQVATPIVASSEAVAEKE GARKEERKPRMGLFHHHHQGLSRSELGRRSSLGEKGGPILGASPHHSSSGEGKAKSSW FGLREAKDPTQKPSPHPVKPLSAAPVEGSPDRKQSRSSLSIALSSGLEKLKTVTSGSI QPVTQAPQAGQMVDTKRLKDSAVLDQSAKYYNLTHDELISLLLQRERELSQRDEHVQE LESYIDRLLVRIMETSPTLLQIPPGPPK" BASE COUNT 826 a 1289 c 1267 g 897 t ORIGIN 1 agcgggtgag gcggggaggc ggcggccggt cggcccggcc cagcccagcc cgcagctgcg 61 gcggcgctca gagttggttc ctgaccgcct tctgccgcgg ccgggtttgt caccaggtcc 121 tggggtctgc accggctcgg ccagacctcg ccccccgctt ctccgccatg gccctggtgc 181 ggggcgcgga gccggcggcg gggccttccc gctggctgcc cacgcacgtc caggtgacgg 241 tgctgcgggc ccgcgggctg cggggcaaga gctcgggagc gggcagcacc agcgacgcgt 301 acacggtgat ccaggtgggc cgcgagaagt acagtacgtc ggtggtggag aagacgcacg 361 gctgtcccga gtggcgtgag gagtgctcct tcgagctgcc gccgggggcc ctggatggcc 421 tgctgcgggc gcaggaggcc gacgcgggcc cggcgccctg ggccgcgagc tccgccgccg 481 cctgcgagct ggtgctcacc accatgcacc gctcgctcat cggcgtcgac aagttcctgg 541 gccaggccac ggtggcgctg gacgaggtct tcggcgcagg ccgcgcccag cacacgcagt 601 ggtacaagct gcactccaag ccaggcaaga aggagaagga acgcggcgag attgaagtca 661 ccatccagtt cacgcgcaac aacctgagcg ccatgtttga cctgtccatg aaggacaagc 721 caaggtctcc cttcagcaag atcagggaca agatgaaggg caagaagaag tatgatctgg 781 aatctgcctc tgccatcctc ccaagcagcg ccatagagga tcctgacctg ggcagcctgg 841 gcaagatggg caaagccaaa ggcttcttcc tccgcaacaa gctgcgcaag tcgtccctga 901 cccagtccaa cacctcgctg ggctcggaca gcaccctgtc ctcagccagc gggagcttgg 961 cctaccaggg acctggcgcc gaactcctca cccgctcacc aagccgtagc agctggctgt 1021 ccactgaagg gggcagggac tctgcacagt cccccaagct gttcacccat aagaggacct 1081 acagcgatga ggccaaccag atgcgagtgg ctcctcctcg ggcccttctg gaccttcagg 1141 gccacctgga tgctgcctcc cgctcttcgc tctgtgtcaa tgggagccac atttacaatg 1201 aggagcccca gggccctgtg cggcaccgca gctccatctc gggctcgctt ccatcctctg 1261 gctccttgca agctgtctct tcccggttct ccgaggaggg gcctcgttcc acagatgaca 1321 cctggcccag aggcagtcgt agcaacagca gctcagaggc agtgcttgga caggaggagc 1381 tgagtgctca ggctaaagtc ctggcccctg gggccagcca ccctggagag gaggaggggg 1441 cccggctacc agagggcaag ccagtccagg ttgccacacc catagtggcc tcctctgagg 1501 ctgtggcaga gaaggaggga gcccggaagg aggaacgcaa gccccggatg ggtctcttcc 1561 accaccacca ccaaggccta agtcggagcg agttgggtcg ccgaagctct ctgggggaaa 1621 aggggggtcc catcctgggg gcctccccac atcactcatc cagtggggag ggaaaggcca 1681 agagtagctg gtttggcttg agagaagcca aggacccgac tcagaaaccc agtccccacc 1741 ccgtgaagcc cctcagtgcc gcccctgtgg agggcagccc cgacaggaag cagtcccgct 1801 ccagtctgag catagccctg agcagtgggc tggagaagct caaaacagtc acatctggga 1861 gcattcagcc tgtgacccag gccccccagg ctggccagat ggtggacacc aaaaggctga 1921 aggactcagc tgtgctggac cagtcggcca agtactacaa cctgacccac gatgagctca 1981 tcagcctgct cctgcagcgg gagcgggagc tgagccagcg ggacgagcat gtgcaggagc 2041 tggagagcta catcgaccgg ctgctggtgc ggatcatgga gacctcaccc acgctgctgc 2101 agatcccccc gggccccccc aaatagcctt cctcacccta cccccaggag ggttggcatg 2161 gacctattgc tgcctgccct ctctcctcct gaactctctc atctgcagtg gggcatcgtc 2221 tgtcttgcct tgtcactcct tgctcctctc cctcctgcct caactggggc tgctggaagg 2281 gggccctctg gattcccttt ggaggcatca ggttctgtgc acaacttgtg tgtctttggg 2341 agccctgggt ctttcccacc tgcctgtttt catatccctc agctttgggg gccccaggga 2401 attggaactc ttcccccaag acagagcagg ggtgaactgt agcttgatgc agtaatctgg 2461 gacaagactg gttgctagca catactttat tatcccccaa ggatggtcag ccatttcttc 2521 ccacagccaa agccccatcc ccttcatttc cctccagtcc ctggaggggc ttctagtatt 2581 actgggacaa tgaccacgct gcctgtttgt ctgtgagtta cgggcaacca gcctcttcag 2641 cctcacaccc attcccctga gagcaagaag cctgtgtggt ctgggccagt ctctgccatg 2701 tcctgagtct gcttcagtct ggagctgttt gtggggcgag tgccatgtgg acagtggtgg 2761 atgatgtgtg tgcttcaggc tgctccctga cccctctgac ctttccacga gtgtcacatg 2821 ggaatgtgtg gggcgcaggg gcgggtgcgg agagagcacc tttttgcttt tcgagctctt 2881 gaccacctcc aatgtgtagg tccctccagg ctggggcttg ggactgctta tgatttgggg 2941 atcaagcctc catgtctatt cttgttgcct gtccagatgc caaaactctg tgttgctgca 3001 gggtttgaac ttttggaaac caattaaaat gtgcctttgg tgggcggggt caagagcccc 3061 tggatgtcga cctctcccgc tgtgtggcgt ccccctccca cctgttgaat acatagggat 3121 ggctctctca gggccctggg aatgggaatg gacagcactg ctgtgggctg ttcccctccc 3181 ctaaagttaa tctcttggtc tggccaagtt gctgctccct caaccttcct gctgtcttcc 3241 cctccctcaa ccccaatagg aggatcccag gataaacact gctgggcagg cgggcaggca 3301 ggcctggggc tgccctgctc actctcattg tctggcctca ggacttagcc atactagact 3361 agtcagcttg cctggaagag ggaggtccca ctatgccttt gggagacacc tatacttagg 3421 aaaaagcctt tgttgtcctc ccatccatcc attaagctgc tatctcagcc tgtcccttct 3481 gccccagggg cttgcctggc ttggctgcag tgcactttga aatgaagtat ctgtcctttg 3541 gcccagcccc tggtttgctt gtagaaaaca tggtaggctt ccccaaggca tctgcaggga 3601 actttggcag cttggggcac cctgaattag caaaaatggg gggtgatgag gtgctgaaga 3661 aggatactta acagcttagt gaggaggcaa gagctcctct gggaccacca cttcttcagg 3721 agagggcctg tgggcttgct tttggaaggc ctcaggcaga cacgtgccct ctgggtgatg 3781 tctgtctgct gccaggatgg agcagaggag cgccacacat ggaggaaagc ccctgtaacg 3841 ttacctacct taaactccac tcatcaaatc tgagaaaagt atccactggt ccccagggtt 3901 tcagtcatgc ttttgggggt cattgggtat tagagaagta agtatctttt ctgagagagg 3961 gggagtcacc ccccctactg gggattcctc tgggctttat tcactcccag ccctggccct 4021 gacctttgtg ggcctcccta atgcccaggg catggatggc ttcagaggag tttttgaatc 4081 gaagcccagg gtccttgttg atgtttcttc tccgagccac acttggagga aagttgcagg 4141 tgggttgggc agggagcagg catggttctg ctttgctgtt tgtcttccta gttaaggctc 4201 tttataaaga gcttcttctt catgttttaa gcactttatg aagaataaaa cattcatgta 4261 ctacaaaaaa aaaaaaaaa //