LOCUS BC034992 2628 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens sorting nexin 10, mRNA (cDNA clone MGC:33053 IMAGE:4827599), complete cds. ACCESSION BC034992 VERSION BC034992.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2628) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2628) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 46 Row: p Column: 10 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 23111022. FEATURES Location/Qualifiers source 1..2628 /db_xref="H-InvDB:HIT000051288" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:33053 IMAGE:4827599" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..2628 /gene="SNX10" /gene_synonym="MGC33054" /db_xref="GeneID:29887" /db_xref="HGNC:HGNC:14974" CDS 189..794 /gene="SNX10" /gene_synonym="MGC33054" /codon_start=1 /product="sorting nexin 10" /protein_id="AAH34992.1" /db_xref="GeneID:29887" /db_xref="HGNC:HGNC:14974" /translation="MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFT MKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFL RKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEED EEGKKENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQES" BASE COUNT 905 a 431 c 473 g 819 t ORIGIN 1 agcggggggg gcgcggggag cgcggggagc gcggggctgc gctcgtgtgc gctcctgggc 61 gctcgccgcc gccgctgccg ccgcgcgcct ttgagtcagc aaactccgcg gcccgcaagc 121 ccggctcggc ccggccctgc tctgttctgc ccggaggagc cgcccattga tcgtgtcctg 181 tgctgaagat gtttccggaa caacagaaag aggaatttgt aagtgtctgg gttcgagatc 241 ctaggattca gaaggaggac ttctggcatt cttacattga ctatgagata tgtattcata 301 ctaatagcat gtgttttaca atgaaaacat cctgtgtacg aagaagatat agagaattcg 361 tgtggctgag gcagagactc caaagtaatg cgttgctggt acaactgcca gaacttccat 421 ctaaaaacct gtttttcaac atgaacaatc gccagcacgt ggatcagcgt cgccagggtc 481 tggaagattt cctcagaaaa gtcctacaga atgcactttt gctttcagat agcagccttc 541 acctcttctt acagagccat ctgaattcag aagacattga ggcgtgtgtt tctgggcaga 601 ctaagtactc tgtggaagaa gcaattcaca agtttgcctt aatgaataga cgtttccctg 661 aagaagatga agaaggaaaa aaagaaaatg atatagatta tgattcagaa agttcatcct 721 ctgggcttgg acacagtagt gatgacagca gttcacatgg atgtaaagta aatacagctc 781 cgcaggaatc ctgaaaaata attctaatgt tactatctta gggatagcaa attatgtcca 841 gtcatagaga agaaagcttc ataataatac attcttacct aaagctcact gtcatgatgt 901 taggtattta aattcttaaa gatgttgggt tgtttattag tggtattttt atgttgtctt 961 attttaggta agcttctgtg taaagctaaa aatcctgtga atacaatact atcctttaca 1021 ggcagacatt attggtaaac aagatcttgc cctccaatga aatgacttac atgttttaaa 1081 aaaccgagtt ggttttattg aatttaaaaa gataggtaac taagtagcat ttaaaatcaa 1141 gatagagcat tccttcttgt atcagtgggg cagtgttacc ataaacacgg tgtatatgtt 1201 gttaaaccct atgaagagta acagtgtaga ccagactgcc tctctcagat atgtgcctga 1261 tattttgtgg atacctcccc tgcactggca aaacactatg cttttgggtg ttagactgaa 1321 atattttaag agtatttaac ctttccagta ttctgtttca cgcttagatg gaaatgtatc 1381 ttatgaatag agacatatta aaataatgtt tacatcttag aaaaaacata gatagtgcta 1441 gtaatattac ttataactgt aatatataga ttcagaaata cattttcatt atccaaaatc 1501 agcttcaaca aatggtttct ggagacaaat aatttgtttt cattatcatt gtataatcag 1561 gttaatgatt tattttttga ctaaatgtgc aatttcttat cactagataa ctttcagtat 1621 cagtggtggt tacttattac ttaaatcaga ggaaggattt tataaagatt aataaattta 1681 attttaccaa taaatattcc cataatttag aaaaggatgt cgacttgcta atttcagaaa 1741 taattattca tttttaaaaa gcccctttta aagcatctac ttgaagattg gtataatttt 1801 cataaaatgt cttttttttt agtgtcccaa agatatctta gataaactat tttgaagttc 1861 agatttcaga tgaggcaaca ttttcttgag ataattaccc aagtttcatc catgttgaat 1921 ggtacaaaat atttctgtga aactaacagg aagatatttt cagataacta ggataacttg 1981 ttgctttgtt acccagccta attgaagagt ggcagaggct actacaaaaa gcaacctttt 2041 cattttcact aagagtttaa aagctattgt attattaaaa agtctttaca atgcttgttt 2101 caaagaacca acagaaaaaa aagctaagaa aactgagaac taacattaaa aaaattaaat 2161 ttagaataag aatgatttct ttaatttgtc ctttttttct ttggtctaaa acattattaa 2221 atttttgtaa atattttgat ttaatgtgtc ttagatcctc attattttaa tacaggaaaa 2281 gaaaagattt agtaatttct taccatgcta atatgtaaag ttcatgccat ccaggcattt 2341 aagagcgatc ctcatccctt cagcaatatg tatttgagtt cacactattt ctgttttaca 2401 gcagttttga aaaacacata ctatgccacc aattgtcata ttatttttag atgatgtaac 2461 atagccatca aaattaatat tatgtaatgc ctaatactta gtatgtaaat gtcacgagat 2521 catttttaca ttaaacgtga aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2581 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa //