LOCUS BC034979 3007 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens family with sequence similarity 46, member D, mRNA
(cDNA clone MGC:26967 IMAGE:4824369), complete cds.
ACCESSION BC034979
VERSION BC034979.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3007)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3007)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC034979.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: i Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34303945.
FEATURES Location/Qualifiers
source 1..3007
/db_xref="H-InvDB:HIT000051279"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26967 IMAGE:4824369"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3007
/gene="FAM46D"
/gene_synonym="MGC26999"
/db_xref="GeneID:169966"
/db_xref="HGNC:HGNC:28399"
CDS 225..1394
/gene="FAM46D"
/gene_synonym="MGC26999"
/codon_start=1
/product="family with sequence similarity 46, member D"
/protein_id="AAH34979.1"
/db_xref="GeneID:169966"
/db_xref="HGNC:HGNC:28399"
/translation="MSEIRFTNLTWDQVITLDQVLDEVIPIHGKGNFPTMEVKPKDII
HVVKDQLIGQGIIVKDARLNGSVASYILASHNGISYKDLDVIFGVELPGNEEFQVVKD
AVLDCLLDFLPKDVKKEKLSPDIMKDAYVQKLVKVCNGHDCWSLISLSNNTGKNLELK
FVSSLRRQFEFSVDSFQIVLDPMLDFYSDKNAKLTKESYPVVVAESMYGDFQEAMTHL
QHKLICTRKPEEIRGGGLLKYCSLLVHGFKPACMSEIKNLERYMCSRFFIDFPHIEEQ
QKKIESYLHNHFIGEGMTKYDYLMTLHGVVNESTVCLMSYERRQILHLITMMALKVLG
ELNILPNTQKVTCFYQPAPYFAAEARYPIYVIPEPPPVSFQPYHPLHFRGSNGMS"
BASE COUNT 1020 a 530 c 498 g 959 t
ORIGIN
1 aggtgatgca gaactctggt aaaggatgtt agtcttcaga gtaagactgt taaattcagc
61 aaagtctact atcagaagac acgtttttct ggttggtgta ttactttatt cagtgataat
121 atggaaatta ctatcttcac tgaaggatct actgaataat cattttaact caactatatt
181 gcattcttga aagcaatcct ttcaattgat ctactgactt cacaatgtct gaaatcagat
241 tcaccaatct cacttgggat caagttataa cactggatca agtgttagat gaagtaattc
301 caattcatgg aaaggggaat ttccccacaa tggaggtaaa accaaaagac atcattcatg
361 ttgtgaaaga tcaactcata gggcaaggaa ttattgttaa agatgccaga ttgaatggtt
421 ccgtagcaag ttacatactt gcaagccaca atggaatcag ctataaggat ctggacgtta
481 tttttggtgt tgagcttcca ggtaacgaag aatttcaggt tgttaaagat gcagttctag
541 actgtctact tgacttttta ccaaaagatg taaagaagga aaagctctcc ccagatatca
601 tgaaagacgc ttacgtacag aaattggtca aggtttgcaa tgggcatgat tgttggagtc
661 ttatctccct ttcaaataac actgggaaga atttagaact aaaatttgtg agttcactca
721 gacggcagtt tgaatttagt gtagattcct ttcaaattgt tttggatccc atgttagact
781 tctacagtga caaaaatgcc aagctaacca aagaatccta tcctgttgtg gtagctgaaa
841 gcatgtatgg agacttccag gaagcaatga cacatttgca acacaagctc atatgtacca
901 ggaaacctga agagattaga ggtggtggcc ttctgaagta ctgcagcttg ctggttcatg
961 gcttcaagcc agcctgtatg tcagaaatca aaaacctaga acgttatatg tgctctagat
1021 tctttattga ttttcctcat atagaagaac agcaaaagaa aattgaatca tacctccaca
1081 accatttcat aggtgaagga atgaccaagt atgactacct tatgaccttg catggagttg
1141 tgaatgaaag cactgtttgc ctcatgagtt atgaaagaag acagattctc cacctgatca
1201 ccatgatggc tttgaaagta cttggagaac taaatattct acccaataca caaaaggtaa
1261 cttgctttta tcagcctgct ccgtactttg cagctgaggc aaggtaccct atttatgtaa
1321 tacctgagcc accccccgtt agcttccagc cataccaccc actgcacttt cgtggatcaa
1381 atggtatgag ttaaaaaata cacatgcaac catagaaact ttgatttaat taaacaccat
1441 ttaaaagcaa gtttccaaat gtaaaattca agatctgttt ttatttttgt acagttacca
1501 attattttca attacagttg atggaatagt agttaccaac tatttttgat caattaagcc
1561 atcatagtaa atacaatatc tataaaccaa ccactttaaa tgtttttcaa acgttattga
1621 ctagctataa taactttcaa atgttgtgtt ccccttgaag tgattttcaa atcttttgac
1681 tacttgtgac tttcaaattt actgtgacaa atatgttaga gatgcctgca tctttgacta
1741 taacataaaa ggacagattc atgttttaaa attaagatgt acagtgaagt atcaaatttt
1801 ttatattcag tcagttcctt tgttacattt agttcttttt ttctattgaa caataccatc
1861 aataaatgtt cagtacttaa cagaaatgcc taatttcaaa agcaacagat tcagaagaca
1921 ttaaaaccct ggacttttca agcatttttt tttgacaatt aaattgggtt ggatacaaaa
1981 atcctactat agtttaaagg aatactggaa aaaaatggtt ctggaaagcc ctggacatta
2041 gtaatttgtc atctatataa taaaacattt agttaatttg tggatttgaa taacaatacc
2101 atacagctgt gcaactacta ctgagatcag atacagggtt ttttgcccct caaaataagt
2161 taaaacgaat gaaaatgacc agctctggat gtgaaagctt tctatcatca tctactacaa
2221 agagactcta aatggcaaac aggaaaaaaa caggcagagg tttatagcca tagcatttac
2281 cattttatgg cttatttgaa aaacatcttt atgttgagaa acattccatt tcagtaagtt
2341 aaaatatttt cattgtaact aaatgaagca ggtttttcat tttgccttta ccaaagatca
2401 ttttctaaca tgccactcaa gtgcctcttc gtgtgaattt ttgcgtaaca ctataattta
2461 ttcaacaact gtataccttt acagtatatc taaatatata cttactacat cgagtatact
2521 gctagaaaaa tctaccagtg ggattaaaaa tgtattttct tcccataatg aaaataattc
2581 atgaccaata ttacctgaag tgtcagaaga ggagctgtct aaaattaata tggatcaggc
2641 cattggaaaa cttcagtatt tccacttggt tatgattttt tgtgagtttc catttcagtt
2701 tttattgacc atcacgtttt ctatcacaac atgacctgac agttgtatcc cgataatttg
2761 ccagttatag actgtgctta tcttcactgt attacaatat tggacagaag tacaccaaat
2821 acggcatttt caaataacca atatttctga gatgttttat accacagcac aagtggccat
2881 cagtatattt ttaaagaatt atatatcaca gaaccctgag gctttaaaac actatggact
2941 taccactttc ttgacaaaga atttgtaatt acaataaaat atttagaaac gaaaaaaaaa
3001 aaaaaaa
//