LOCUS BC034919 3431 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ectodysplasin A2 receptor, mRNA (cDNA clone MGC:45627
IMAGE:5434545), complete cds.
ACCESSION BC034919
VERSION BC034919.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3431)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3431)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 43 Row: m Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40549449.
FEATURES Location/Qualifiers
source 1..3431
/db_xref="H-InvDB:HIT000051252"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45627 IMAGE:5434545"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_47"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3431
/gene="EDA2R"
/gene_synonym="EDA-A2R"
/gene_synonym="EDAA2R"
/gene_synonym="TNFRSF27"
/gene_synonym="XEDAR"
/db_xref="GeneID:60401"
/db_xref="HGNC:HGNC:17756"
/db_xref="MIM:300276"
CDS 58..951
/gene="EDA2R"
/gene_synonym="EDA-A2R"
/gene_synonym="EDAA2R"
/gene_synonym="TNFRSF27"
/gene_synonym="XEDAR"
/codon_start=1
/product="ectodysplasin A2 receptor"
/protein_id="AAH34919.1"
/db_xref="GeneID:60401"
/db_xref="HGNC:HGNC:17756"
/db_xref="MIM:300276"
/translation="MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTAC
PPRRYKSSWGHHRCQSCITCAVINRVQKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQ
ECIPCTKQTPTSEVQCAFQLSLVEADAPTVPPQEATLVALVSSLLVVFTLAFLGLFFL
YCKQFFNRHCQRGGLLQFEADKTAKEESLFPVPPSKETSAESQVSENIFQTQPLNPIL
EDDCSSTSGFPTQESFTMASCTSESHSHWVHSPIECTELDLQKFSSSASYTGAETLGG
NTVESTGDRLELNVPFEVPSP"
BASE COUNT 907 a 823 c 729 g 972 t
ORIGIN
1 ccggagtccc atttgggagc aagagccatc tactcgtccg ttaccggcct tcccaccatg
61 gattgccaag aaaatgagta ctgggaccaa tggggacggt gtgtcacctg ccaacggtgt
121 ggtcctggac aggagctatc caaggattgt ggttatggag agggtggaga tgcctactgc
181 acagcctgcc ctcctcgcag gtacaaaagc agctggggcc accacagatg tcagagttgc
241 atcacctgtg ctgtcatcaa tcgtgttcag aaggtcaact gcacagctac ctctaatgct
301 gtctgtgggg actgtttgcc caggttctac cgaaagacac gcattggagg cctgcaggac
361 caagagtgca tcccgtgcac gaagcagacc cccacctctg aggttcaatg tgccttccag
421 ttgagcttag tggaggcaga tgcacccaca gtgccccctc aggaggccac acttgttgca
481 ctggtgagca gcctgctagt ggtgtttacc ctggccttcc tggggctctt cttcctctac
541 tgcaagcagt tcttcaacag acattgccag cgtggaggtt tgctgcagtt tgaggctgat
601 aaaacagcaa aggaggaatc tctcttcccc gtgccaccca gcaaggagac cagtgctgag
661 tcccaagtga gtgagaacat ctttcagacc cagccactta accctatcct cgaggacgac
721 tgcagctcga ctagtggctt ccccacacag gagtccttta ccatggcctc ctgcacctca
781 gagagccact cccactgggt ccacagcccc atcgaatgca cagagctgga cctgcaaaag
841 ttttccagct ctgcctccta tactggagct gagaccttgg ggggaaacac agtcgaaagc
901 actggagaca ggctggagct caatgtgccc tttgaagttc ccagccctta actctaatga
961 ggtctcttgg gcccctggca gccttgccca gttgttctct ctggactctg ttcctatacc
1021 acaacagcag caggggcctg aaatgtgatg tccacaagag ctaataccct acagatgggg
1081 catatcctat cccatcccac cagaggattg attctccatt tcacaaggac tgatctggag
1141 catttcttgc ttcccttttg tagtctgggg agccagattc cacattcatg ggactaccag
1201 acatgttcct agctcaactt gattatagag aagaggagag aggacagtga atggggtagg
1261 gttttcatgt ctgcattttt ggtcaggtaa gcctctcaaa attgtgttgg cacatctacc
1321 tagcacttta gggacaaaat caaacccttc tcccctttta gctcctccac actgtctccc
1381 tcctcaacac acacacacac acatacacac acatatacat agacacacaa acacacacac
1441 acacattaat atctatcttg ggggaggcct cgtgccataa ttcccaagtt catgtctcag
1501 actgctgcat tgcagcatga ggcagggcaa acactttccc tctagatccc tggggcctca
1561 ccctgtattt gaggttctca ccaccctcag cagggagaag ggctgaagtt cgccattttg
1621 gaaccttaca gaacatttct gagccaaagt aatcttcctt ctggggcctg agttccccaa
1681 actaccccac agcagtccct caaagacagc cctcaatcca tgtagggaca tctgagtatg
1741 cctctttcta ttgaaatgtc aattcaatcc cagctttctc accaccgttc ccctttgatt
1801 ctttctcaat tgtctttttg cctttagctc ccacctatac atctcatgct cagagaaaaa
1861 caagttcctt agaggttgta ttctttattc tccaagaatc tgtctgaaac ttgtacagct
1921 agttcctgtc ccacaactat taagtggttt attaagtaca ttaggcagaa tgtgcacttc
1981 atcaccaggt tctagctctg gcaaaggagt gctgtctaca gcaagatttt tgcttttaga
2041 attttattaa ctacatcttt tgggttcatc catctacaaa cactgattaa gggcccctgg
2101 ggcaaccaat tgatcagatt actaaaagga cttgggaaaa agcaaaaagg tcccattgta
2161 ctggactgag gattagaagc aattgaaata caagcctgta ccaagcaagc agcctggccc
2221 cacacaggta ttagcaaata tgtggtaacc aaggttttag gccttggcct ttaggtttcc
2281 tgtttttttt ttgtttttgt ttttgttttt gtttttctgc aacaggttat tcttatctca
2341 ctggctttca ctgatcatgt ttagaccttc tggtagaaga aataatatcc agacagggga
2401 tgatttggct tcagcaggct gcaggtgttc aaaggttgcc atgtggctgg cagtggttca
2461 agcccacatt tgacactgct gctctagagg aaagataatg atggtaacac agtaataata
2521 ataataataa caaaaatatg ataaagtgaa agagtaagac ttcttcagtg tgcttgctca
2581 tggcatgaat gctatgtgga cagcccaagc catacccaga atcaccttaa ttccaacttt
2641 ttgaggttca gcaattggag gtggcaattg gctttgcatt ttaaagtatt tcgggtaaag
2701 gtgaagtgaa ggattttcgt ctttataatt tctgtttggc catggcaaat accatagttg
2761 agtatttgct tcaggagagt tctttttaca gttttacttt tcaatgctga ggcatatttc
2821 tttgagcact gtgcttttat gtgtctttct acaaaggggt tattggtcag tggaagaaca
2881 aagtacactt gataaaaaca ttttcaacat acattgagcc taaacagcag ttaagttgtc
2941 tctaaatgaa ctagcaaaaa aaaaaaatgt agtttttgtt tgtaaggaag gggaggtatt
3001 tcctgagaat gaattttttt ttttttggat tactgttttt ctctccatat accttgactt
3061 ggattttgac aggagggagc ctgggaaaat aattttttcc tccaagattc tcagatccag
3121 gttaggaaag gattcagcac tacagcatac ccctctacaa catacagccc tgtcacattg
3181 agatcataat ccctcctgtc ccactcctct ctaccaaccc caccctacta gctaggtctt
3241 cagtgtttta cattgaatat tggtacattt taattatttt ttctcataaa tgggttattt
3301 atagaaattt tgttaactct tgagccatat gcatgtgtag atactggcag ggctatgttt
3361 gtttatgatg ctctgcaaac atttcatatt ggccaataaa cagaaatata tccaaaaaaa
3421 aaaaaaaaaa a
//