LOCUS BC034814 650 bp mRNA linear HUM 30-SEP-2003
DEFINITION Homo sapiens transient receptor potential cation channel, subfamily
V, member 6, mRNA (cDNA clone IMAGE:4516052), complete cds.
ACCESSION BC034814
VERSION BC034814.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 650)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 650)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (24-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 52 Row: c Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21361434
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..650
/db_xref="H-InvDB:HIT000051245"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4516052"
/tissue_type="Bladder, transitional cell papilloma"
/clone_lib="NIH_MGC_93"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..650
/gene="TRPV6"
/gene_synonym="ABP/ZF"
/gene_synonym="CAT1"
/gene_synonym="CATL"
/gene_synonym="ECAC2"
/gene_synonym="HSA277909"
/gene_synonym="ZFAB"
/db_xref="GeneID:55503"
/db_xref="MIM:606680"
CDS 185..505
/gene="TRPV6"
/gene_synonym="ABP/ZF"
/gene_synonym="CAT1"
/gene_synonym="CATL"
/gene_synonym="ECAC2"
/gene_synonym="HSA277909"
/gene_synonym="ZFAB"
/codon_start=1
/product="TRPV6 protein"
/protein_id="AAH34814.1"
/db_xref="GeneID:55503"
/db_xref="MIM:606680"
/translation="MYVENHCSRPALLLQLWGRGSPAQARGWQGVRNSPVACSSPFRQ
EHCMSEHFKNRPACLGARSPPQGHKWGESPSQGTQAGAGKCRACGKRVSEGDRNGSGG
GKWG"
BASE COUNT 231 a 146 c 167 g 106 t
ORIGIN
1 aatcaacagg ggtctggagg acggggagag ctgggaatat cagatctgac tgcgtgttct
61 cacttcgctt cctggaactt gctctcattt tcctgggtgc atcaaacaaa acaaaaacca
121 aacacccaga ggtctcatct cccaggcccc aggggagaaa gaggagtagc atgaacgcca
181 aggaatgtac gttgagaatc actgctccag gcctgcatta ctccttcagc tctggggcag
241 aggaagccca gcccaagcac ggggctggca gggcgtgagg aactctcctg tggcctgctc
301 atcacccttc cgacaggagc actgcatgtc agagcacttt aaaaacaggc cagcctgctt
361 gggcgctcgg tctccacccc agggtcataa gtggggagag agcccttccc agggcaccca
421 ggcaggtgca gggaagtgca gagcttgtgg aaagcgtgtg agtgagggag acaggaacgg
481 ctctgggggt gggaagtggg gctaggtctt gccaactcca tcttcaataa agtcgttttc
541 ggatccctgc caaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
601 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//