LOCUS BC034810 3714 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens zinc finger protein 550, mRNA (cDNA clone MGC:41917
IMAGE:4823435), complete cds.
ACCESSION BC034810
VERSION BC034810.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3714)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3714)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 71 Row: i Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40255150
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..3714
/db_xref="H-InvDB:HIT000051244"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:41917 IMAGE:4823435"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3714
/gene="ZNF550"
/db_xref="GeneID:162972"
/db_xref="HGNC:HGNC:28643"
CDS 185..1426
/gene="ZNF550"
/codon_start=1
/product="ZNF550 protein"
/protein_id="AAH34810.1"
/db_xref="GeneID:162972"
/db_xref="HGNC:HGNC:28643"
/translation="MLVTFKDVAVTFTREEWRQLDLAQRTLYREVMLETCGLLVSLGH
RVPKPELVHLLEHGQELWIVKRGLSHATCAGDRAQVHTREPTTYPPVLSERAFLRGSL
TLESSTSSDSRLGRARDEEGLLEMQKGKVTPETDLHKETHLGKVSLEGEGLGTDDGLH
SRALQEWLSADVLHECDSQQPGKDALIHAGTNPYKCKQCGKGFNRKWYLVRHQRVHTG
MKPYECNACGKAFSQSSTLIRHYLIHTGEKPYKCLECGKAFKRRSYLMQHHPIHTGEK
PYECSQCRKAFTHRSTFIRHNRTHTGEKPFECKECEKAFSNRARLIQHYIIHTGEKPY
DCMACGKAFRCSSELTQHQRIHTGEKPYECTQCGKAFHRSTYLIQHSVIHTGEMPYKC
IECGKAFKRRSHLLQHQRVHT"
BASE COUNT 1053 a 768 c 856 g 1037 t
ORIGIN
1 gacgtttgtg gtggggcgtg ttggtccgcg ctctcagaac tgtgctggga aggatggtag
61 ggcgactggg gctcacctcc gcaccgttgt aggacccggg gtagggtttt gagcccgtgg
121 gagctgcccc acgcggcctc gtcctgccaa cggtcggatg gcggagacga aggacgcagc
181 gcagatgttg gtgaccttca aggatgtggc tgtgaccttt acccgggagg agtggagaca
241 gctggacctg gcccagagga ccctgtaccg agaggtgatg ctggagacct gtgggcttct
301 ggtttcacta gggcatcggg ttcccaaacc agagttggtc cacctgctag agcatgggca
361 ggagctgtgg atagtgaaga gaggcctctc acatgctacc tgtgcaggtg acagagcaca
421 agttcatacc agagagccaa ccacttaccc gccagtctta tctgagcggg cctttctccg
481 gggaagcctg actctggaat cttcaacctc aagtgattcg aggttgggga gagctaggga
541 tgaggaaggg cttttggaaa tgcagaaagg taaagtgaca ccggagacag acctccacaa
601 ggagacccat cttgggaaag tgagccttga aggtgaaggt ttggggacag atgatggtct
661 gcactccagg gcattacaag agtggttatc agcagatgtt ctccatgaat gtgactcaca
721 gcaaccaggg aaagacgcct tgattcatgc agggacaaac ccctacaaat gcaagcagtg
781 tgggaaaggt tttaacagga agtggtatct cgttcgacat cagagggttc acactggaat
841 gaaaccctat gaatgcaatg catgtgggaa agcctttagc cagagctcaa ctctcattcg
901 gcactacctc atccacaccg gggagaaacc atacaagtgc cttgagtgtg ggaaggcctt
961 caaacgcagg tcgtacctca tgcagcacca tccaatccac actggagaga aaccctatga
1021 gtgtagtcag tgtcgaaagg ccttcaccca ccggtctact tttattcgcc ataataggac
1081 ccacactgga gaaaagccct ttgagtgcaa agaatgtgag aaagccttta gcaatagagc
1141 ccgcctaatt caacattaca tcatccacac tggagagaag ccctatgatt gcatggcatg
1201 tggaaaggcc ttcagatgca gctcagaact cacacagcac cagcggattc acactgggga
1261 gaagccctat gaatgcaccc agtgtgggaa agcctttcac cggagcacgt acctcattca
1321 gcactctgtc atccacactg gggagatgcc ctacaagtgt atcgagtgtg ggaaggcctt
1381 caaacgcagg tcacaccttc tgcagcacca aagggtccat acatgagaga accctattgc
1441 tgcaatgaat acagcaaggc ctttacccac tgttatttta tcattcataa tgggacccac
1501 actgtaggaa gaagtccttc gagtgcaaag aatgtcagga aacttttcat tttttttgtc
1561 agctctttct taactaacac atgagcagtc actttggaga gaagccctgt gaatacagtg
1621 aatgtaagga tcccttcagt caccactcag ttctcactca ttgcagaagg attcatacca
1681 gggggaaatg tggaaggcat tccatcaaca tcagagaact catgctggag aaagacattc
1741 caaatataac tattaaggac agtctttggc cagagcagaa atcttactat ctgagaatca
1801 taatgaaaag ttactacata attgttattg atgtgagaaa actttgtgac caggttgtca
1861 cttgcttgtc ctataaagag ccatgctgga atttgaccca ccttgggatt ttctctatga
1921 acttatgaaa accttcagtt acaggacaga gtgcacagtt tcctctcctg tgggaaggag
1981 agttgactct tgaggacccc caccctcctg catcctctct ctggaaggct gcatgtattg
2041 tagctgtggc tgtacttgta cctaaggccc tgggttcaag agagttggag aaacccctct
2101 agaaacatat tggctgtcat caaagggttc tttccaggcc tgaggaccta ggccccagtt
2161 tgtcccaaag caggagtgtt ttccatggga taaaggacac cctaggtttt tcttagcttc
2221 cagctctttc catacagtct tcactcaagt gtttggtaca aggatctact atgaacttgc
2281 tgctgtgata gaaaaactgc ttaaggttga aaagagaaat ctaagaaatt gctgacggaa
2341 taaaaacata atagaactac aacaccgaag gaaatgaaag aagcaagaag gaaagcacca
2401 gaagtgattt ggaagagaaa tcctaaaatg aatgtgaaca acagagtgat cagaagagtg
2461 tagggaatta atagtttctt taaacaagcc atctcacaat ggaagcctgt gtgtcttgaa
2521 attgctgtgg ttattattca ctctgccctt tgaagaactg cagaaattca tagggcaatg
2581 ttaagtgttt gtgtctccaa aaaagatgtt ggagtcgtta ccctcagaac ctcaggtaat
2641 catgttagtt aatccattag gttagttcct aattgactat gactgtgtcc ttagaaaaat
2701 gggaaatttg gtcacagagg cagatgtaca gagggaagac gatgtgaaga cacaggaaga
2761 acatcttcaa gccaaggaac acacggggct accagaagcc gagatagaag catggaacat
2821 atgttctagt aagaagtgtc tgggttgttt tggttttttt tctttggagt ttttgtggta
2881 ttaaattatt tttaaattat gttttattgt agacctcaca attctttttt tttctttttc
2941 actcaaacta cagcaaaata ttatatttct atcctatatt tcatgggctt acctctagcc
3001 aattgttttt aactgccatg taatatttta catcatgaag ctttcatcct tgattcaaat
3061 cctctgatta tggacatgta tttcctccat tttcctgcta tgaaatatat caccaccagc
3121 ttgattcaac cttaaaaata aggtcatcag tattatgttc taaataaact tatggccata
3181 catgagaaat gtaccttgca gctgaatggc taggtcatat ggtgatctag tatgtaactg
3241 gaattatgtt atacattgcc cttcctctcc cataagatgg acaaaagtgt ttctgtatca
3301 ctgtgtccca gacaatattt agaattaccc agctttccag tttttacttt agaagtttaa
3361 agtgatatag aatatatctg gtatttctca tattgaaata catttgaaca ttagttcata
3421 tcctttcatt gccttttgtt tttcctcttc tgtcaatggt ctactcatat gttggcctgt
3481 ctttatttgt atcttgactt tttattgtgt attttgttta tggtggggta ctttattggt
3541 gattaatacg attttcaagt atattatatg ggctagtccc ttgatactat tgacactgta
3601 tttatcttca gtctcttgtt ggtatctaac tttggttctg aagtttatgg aatggaagta
3661 tttaattgga aagattaaac atattgattt taattaacaa aaaaaaaaaa aaaa
//