LOCUS BC034781 2746 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens neuronal pentraxin II, mRNA (cDNA clone MGC:35142 IMAGE:5169124), complete cds. ACCESSION BC034781 VERSION BC034781.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2746) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2746) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (24-JUL-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 51 Row: b Column: 6 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 28195383. FEATURES Location/Qualifiers source 1..2746 /db_xref="H-InvDB:HIT000051238" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:35142 IMAGE:5169124" /tissue_type="Brain, adult medulla" /clone_lib="NIH_MGC_119" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2746 /gene="NPTX2" /gene_synonym="NARP" /gene_synonym="NP-II" /gene_synonym="NP2" /db_xref="GeneID:4885" /db_xref="HGNC:HGNC:7953" /db_xref="MIM:600750" CDS 166..1461 /gene="NPTX2" /gene_synonym="NARP" /gene_synonym="NP-II" /gene_synonym="NP2" /codon_start=1 /product="neuronal pentraxin II" /protein_id="AAH34781.1" /db_xref="GeneID:4885" /db_xref="HGNC:HGNC:7953" /db_xref="MIM:600750" /translation="MLALLAASVALAVAAGAQDSPAPGSRFVCTALPPEAVHAGCPLP AMPMQGGAQSPEEELRAAVLQLRETVVQQKETLGAQREAIRELTGKLARCEGLAGGKA RGAGATGKDTMGDLPRDPGHVVEQLSRSLQTLKDRLESLEHQLRANVSNAGLPGDFRE VLQQRLGELERQLLRKVAELEDEKSLLHNETSAHRQKTESTLNALLQRVTELERGNSA FKSPDAFKVSLPLRTNYLYGKIKKTLPELYAFTICLWLRSSASPGIGTPFSYAVPGQA NEIVLIEWGNNPIELLINDKVAQLPLFVSDGKWHHICVTWTTRDGMWEAFQDGEKLGT GENLAPWHPIKPGGVLILGQEQDTVGGRFDATQAFVGELSQFNIWDRVLRAQEIVNIA NCSTNMPGNIIPWVDNNVDVFGGASKWPVETCEERLLDL" BASE COUNT 592 a 790 c 805 g 559 t ORIGIN 1 agcgcggtgg gtgcggctgt gagacggcag gagacttctg ccccgcggtg cacgcgaccc 61 tcgagacgac agcgcggcta ctgccagcag cgaaggcgcc tcccgcggag cgcccagacg 121 gcgcccgctc gcccatgccg agctgagcgc ggcagcggcg gcgggatgct ggcgctgctg 181 gccgccagcg tggcgctcgc cgtggccgct ggggcccagg acagcccggc gcccggtagc 241 cgcttcgtgt gcacggcact gcccccagag gcggtgcacg ccggctgccc gctgcccgcg 301 atgcccatgc agggcggcgc gcagagtccc gaggaggagc tgagggccgc ggtgctgcag 361 ctgcgcgaga ccgtcgtgca gcagaaggag acgctgggcg cgcagcgcga ggccatccgc 421 gagctcacgg gcaagctagc gcgctgcgag gggctggcgg gcggcaaggc gcgcggcgcg 481 ggggccacgg gcaaggacac tatgggcgac ctgccgcggg accccggcca cgtcgtggag 541 cagctcagcc gctcgctgca gaccctcaag gaccgcctgg agagcctcga gcaccagctc 601 agagcaaacg tgtccaatgc tgggctgccc ggcgacttcc gcgaggtgct ccagcagcgg 661 ctgggggagc tggagaggca gcttctgcgc aaggtggcag agctggagga cgagaagtcc 721 ctgctgcaca atgagacctc ggctcaccgg cagaagaccg agagcaccct gaacgcgctg 781 ctgcagaggg tcaccgagct ggagcgaggc aatagcgcct ttaagtcacc agatgcgttc 841 aaggtgtccc tcccactccg cacaaactac ctatacggca agatcaagaa gacgctgcct 901 gagctgtacg ccttcaccat ctgcctgtgg ctgcggtcca gcgcctcacc aggcattggc 961 acccccttct cctatgcggt gccagggcag gccaacgaga tcgtgctgat cgagtggggc 1021 aacaacccca tcgagctgct catcaacgac aaggttgcgc agctgcccct gtttgtcagt 1081 gacggcaagt ggcaccacat ctgtgtcacc tggacgacac gggatggcat gtgggaggca 1141 ttccaggacg gagagaagct gggcactggg gagaacctgg ccccctggca ccccatcaag 1201 cccgggggcg tgctgatcct tggacaagag caggacaccg tggggggtag gtttgatgcc 1261 actcaggcat ttgtcgggga gctcagccag ttcaacatat gggaccgcgt ccttcgcgca 1321 caagaaattg tcaacatcgc caactgctcc acaaacatgc cgggcaacat catcccgtgg 1381 gtggacaata acgtcgatgt gttcggaggg gcctccaagt ggcccgtgga gacgtgtgag 1441 gagcgtctcc ttgacttgta gccgccttct cctctgtcca ggaggccggg atcaggctgt 1501 tgccatggaa gttcagggcc atagactgcc ccacttaaac tcttgtcagt ctgggctcag 1561 ggttcccaga gctcattccc caggaatctc taagaccagg gctggggcag tgtctgtcac 1621 tggcttgttt gttccctacc aatattctgt tgctgtttga agtagtgcca gggtcccctg 1681 ggaagatgcc cccaagacac ctgccccaag tgggtggata tctgccttcc tgctgcaagt 1741 ggaggcaggt ccagcagccc ctcttcagag cccctgtaaa tgctatcgca gcctgagtcc 1801 tgccgccttc cagttccttg gtgtcccgtg caccccttct gtctgtcccc tttcatggct 1861 gtgcagccgt cccgctggag tggccatgtc ccttgtgcat tgagtgcatc cccgctggtg 1921 actaagctcg cagcaagcgg ctaccccccg atctgcaaaa gggcctctcc ctttgtgttc 1981 tatacattgt gaatcttccc gtctgaagaa cgcccagcct gcccagacaa agccccgcct 2041 tccccaaagc agaggggctg tctgtgtctc cagaaagggg acatcggggg ggaggggggc 2101 tcagaaagga gaagggctgt gatctccggt cccttccccc atcatccttc cttagactga 2161 tgctttgact gaatcatcac tagctatggc attaaaaggc ctctcttctc atctggtgcc 2221 aaaggttccg ttgcagcttt ttacaaccat ccggtgtggt ttggaggttt tgtttttttt 2281 ttttcccaac agaaaagaac agccattaga agaaggctcc cattttctga tgttccgccc 2341 cactgtgaag agtgtgctcg ttttaaattc atgttgattc ttgtaagcac tggactgtct 2401 tcatcaagta tttccctaca gaactcctca agaaaacaga gatcatttgg ctagagattg 2461 tctgagtgac tccaagctac tcactgtatt ggacgggagt agtaatttat tttaaagata 2521 aagtgactaa gtggggaaat ttataaagct aaatattata tattttattt ttcatacatg 2581 tttgaagtgc aaatctgtgg atattccatt tgtaggacca agtcgacatg cccatcctga 2641 cattgtatgc tacgagaact cttctgatga tggaatttcg attaaagtgc actgaaagat 2701 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa //