LOCUS BC034737 2850 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ligand of numb-protein X 1, mRNA (cDNA clone MGC:34086
IMAGE:5194423), complete cds.
ACCESSION BC034737
VERSION BC034737.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2850)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2850)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 50 Row: m Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14249127.
FEATURES Location/Qualifiers
source 1..2850
/db_xref="H-InvDB:HIT000051221"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34086 IMAGE:5194423"
/tissue_type="Brain, adult, 6 pooled whole brains"
/clone_lib="NIH_MGC_114"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2850
/gene="LNX1"
/gene_synonym="MPDZ"
/gene_synonym="PDZRN2"
/db_xref="GeneID:84708"
/db_xref="HGNC:HGNC:6657"
/db_xref="MIM:609732"
CDS 225..2123
/gene="LNX1"
/gene_synonym="MPDZ"
/gene_synonym="PDZRN2"
/codon_start=1
/product="ligand of numb-protein X 1"
/protein_id="AAH34737.1"
/db_xref="GeneID:84708"
/db_xref="HGNC:HGNC:6657"
/db_xref="MIM:609732"
/translation="MKALLLLVLPWLSPANYIDNVGNLHFLYSELCKGASHYGLTKDR
KRRSQDGCPDGCASLTATAPSPEVSAAATISLMTDEPGLDNPAYVSSAEDGQPAISPV
DSGRSNRTRARPFERSTIRSRSFKKINRALSVLRRTKSGSAVANHADQGRENSENTTA
PEVFPRLYHLIPDGEITSIKINRVDPSESLSIRLVGGSETPLVHIIIQHIYRDGVIAR
DGRLLPGDIILKVNGMDISNVPHNYAVRLLRQPCQVLWLTVMREQKFRSRNNGQAPDA
YRPRDDSFHVILNKSSPEEQLGIKLVRKVDEPGVFIFNVLDGGVAYRHGQLEENDRVL
AINGHDLRYGSPESAAHLIQASERRVHLVVSRQVRQRSPDIFQEAGWNSNGSWSPGPG
ERSNTPKPLHPTITCHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVI
SRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKEYEPQEDCSSP
AALDSNHNMAPPSDWSPSWVMWLELPRCLYNCKDIVLRRNTAGSLGFCIVGGYEEYNG
NKPFFIKSIVEGTPAYNDGRIRCGDILLAVNGRSTSGMIHACLARLLKELKGRITLTI
VSWPGTFL"
BASE COUNT 886 a 600 c 649 g 715 t
ORIGIN
1 ggctccttgc gttcctacat cctctcatct gagaatcaga gagcataatc ttcttacggg
61 cccgtgattt attaacgtgg cttaatctga aggttctcag tcaaattctt tgtgatctac
121 tgattgtggg ggcatggcaa ggtttgctta aaggagcttg gctggtttgg gcccttgtag
181 ctgacagaag gtggccaggg agaaggcagc acactgctcg gagaatgaag gcgcttctgt
241 tgctggtctt gccttggctc agtcctgcta actacattga caatgtgggc aacctgcact
301 tcctgtattc agaactctgt aaaggtgcct cccactacgg cctgaccaaa gataggaaga
361 ggcgctcaca agatggctgt ccagacggct gtgcgagcct cacagccacg gctccctccc
421 cagaggtttc tgcagctgcc accatctcct taatgacaga cgagcctggc ctagacaacc
481 ctgcctacgt gtcctcggca gaggacgggc agccagcaat cagcccagtg gactctggcc
541 ggagcaaccg aactagggca cggccctttg agagatccac tattagaagc agatcattta
601 aaaaaataaa tcgagctttg agtgttcttc gaaggacaaa gagcgggagt gcagttgcca
661 accatgccga ccagggcagg gaaaattctg aaaacaccac tgcccctgaa gtctttccaa
721 ggttgtacca cctgattcca gatggtgaaa ttaccagcat caagatcaat cgagtagatc
781 ccagtgaaag cctctctatt aggctggtgg gaggtagcga aaccccactg gtccatatca
841 ttatccaaca catttatcgt gatggggtga tcgccagaga cggccggcta ctgccaggag
901 acatcattct aaaggtcaac gggatggaca tcagcaatgt ccctcacaac tacgctgtgc
961 gtctcctgcg gcagccctgc caggtgctgt ggctgactgt gatgcgtgaa cagaagttcc
1021 gcagcaggaa caatggacag gccccggatg cctacagacc ccgagatgac agctttcatg
1081 tgattctcaa caaaagtagc cccgaggagc agcttggaat aaaactggtg cgcaaggtgg
1141 atgagcctgg ggttttcatc ttcaatgtgc tggatggcgg tgtggcatat cgacatggtc
1201 agcttgagga gaatgaccgt gtgttagcca tcaatggaca tgatcttcga tatggcagcc
1261 cagaaagtgc ggctcatctg attcaggcca gtgaaagacg tgttcacctc gtcgtgtccc
1321 gccaggttcg gcagcggagc cctgacatct ttcaggaagc cggctggaac agcaatggca
1381 gctggtcccc agggccaggg gagaggagca acactcccaa gcccctccat cctacaatta
1441 cttgtcatga gaaggtggta aatatccaaa aagaccccgg tgaatctctc ggcatgaccg
1501 tcgcaggggg agcatcacat agagaatggg atttgcctat ctatgtcatc agtgttgagc
1561 ccggaggagt cataagcaga gatggaagaa taaaaacagg tgacattttg ttgaatgtgg
1621 atggggtcga actgacagag gtcagccgga gtgaggcagt ggcattattg aaaagaacat
1681 catcctcgat agtactcaaa gctttggaag tcaaagagta tgagccccag gaagactgca
1741 gcagcccagc agccctggac tccaaccaca acatggcccc acccagtgac tggtccccat
1801 cctgggtcat gtggctggaa ttaccacggt gcttgtataa ctgtaaagat attgtattac
1861 gaagaaacac agctggaagt ctgggcttct gcattgtagg aggttatgaa gaatacaatg
1921 gaaacaaacc ttttttcatc aaatccattg ttgaaggaac accagcatac aatgatggaa
1981 gaattagatg tggtgatatt cttcttgctg tcaatggtag aagtacatca ggaatgatac
2041 atgcttgctt ggcaagactg ctgaaagaac ttaaaggaag aattactcta actattgttt
2101 cttggcctgg cactttttta tagaatcaat gatgggtcag aggaaaacag aaaaatcaca
2161 aataggctaa gaagttgaaa cactatattt atcttgtcag tttttatatt taaagaaaga
2221 atacattgta aaaatgtcag gaaaagtatg atcatctaat gaaagccagt tacacctcag
2281 aaaatatgat tccaaaaaaa ttaaaactac tagttttttt tcagtgtgga ggatttctca
2341 ttactctaca acattgttta tattttttct attcaataaa aagccctaaa acaactaaaa
2401 tgatttgtat accccactga attcaagctg atttaaattt aaaatttggt atatgctgaa
2461 gtctgccaag ggtacattat ggccattttt aatttacagc taaaatattt tttaaaatgc
2521 attgctgaga aacgttgctt tcatcaaaca agaataaata tttttcagaa gttatagttg
2581 tcttttagta tgtgatacta attaagatta cttttgtatt atcactattt aaaagatcct
2641 agtaatttat tctttcaaat accatgttat ttgttaccat caccgatgaa tacctcctag
2701 gcttatccct aaaaatgctc gctcagagaa ttaattataa acttgttttg tttttagtaa
2761 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2821 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//