LOCUS BC034730 3428 bp mRNA linear HUM 16-DEC-2006
DEFINITION Homo sapiens NLR family, pyrin domain containing 11, mRNA (cDNA
clone MGC:17341 IMAGE:4341197), complete cds.
ACCESSION BC034730
VERSION BC034730.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3428)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3428)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: j Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21450724.
FEATURES Location/Qualifiers
source 1..3428
/db_xref="H-InvDB:HIT000051219"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17341 IMAGE:4341197"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3428
/gene="NLRP11"
/gene_synonym="CLR19.6"
/gene_synonym="NOD17"
/gene_synonym="PAN10"
/gene_synonym="PYPAF6"
/gene_synonym="PYPAF7"
/db_xref="GeneID:204801"
/db_xref="HGNC:HGNC:22945"
/db_xref="MIM:609664"
CDS 89..3190
/gene="NLRP11"
/gene_synonym="CLR19.6"
/gene_synonym="NOD17"
/gene_synonym="PAN10"
/gene_synonym="PYPAF6"
/gene_synonym="PYPAF7"
/codon_start=1
/product="NLR family, pyrin domain containing 11"
/protein_id="AAH34730.1"
/db_xref="GeneID:204801"
/db_xref="HGNC:HGNC:22945"
/db_xref="MIM:609664"
/translation="MAESDSTDFDLLWYLENLSDKEFQSFKKYLARKILDFKLPQFPL
IQMTKEELANVLPISYEGQYIWNMLFSIFSMMRKEDLCRKIIGRRNRNQEACKAVMRR
KFMLQWESHTFGKFHYKFFRDVSSDVFYILQLAYDSTSYYSANNLNVFLMGERASGKT
IVINLAVLRWIKGEMWQNMISYVVHLTSHEINQMTNSSLAELIAKDWPDGQAPIADIL
SDPKKLLFILEDLDNIRFELNVNESALCSNSTQKVPIPVLLVSLLKRKMAPGCWFLIS
SRPTRGNNVKTFLKEVDCCTTLQLSNGKREIYFNSFFKDRQRASAALQLVHEDEILVG
LCRVAILCWITCTVLKRQMDKGRDFQLCCQTPTDLHAHFLADALTSEAGLTANQYHLG
LLKRLCLLAAGGLFLSTLNFSGEDLRCVGFTEADVSVLQAANILLPSNTHKDRYKFIH
LNVQEFCTAIAFLMAVPNYLIPSGSREYKEKREQYSDFNQVFTFIFGLLNANRRKILE
TSFGYQLPMVDSFKWYSVGYMKHLDRDPEKLTHHMPLFYCLYENREEEFVKTIVDALM
EVTVYLQSDKDMMVSLYCLDYCCHLRTLKLSVQRIFQNKEPLIRPTASQMKSLVYWRE
ICSLFYTMESLRELHIFDNDLNGISERILSKALEHSSCKLRTLKLSYVSTASGFEDLL
KALARNRSLTYLSINCTSISLNMFSLLHDILHEPTCQISHLSLMKCDLRASECEEIAS
LLISGGSLRKLTLSSNPLRSDGMNILCDALLHPNCTLISLVLVFCCLTENCCSALGRV
LLFSPTLRQLDLCVNRLKNYGVLHVTFPLLFPTCQLEELHLSGCFFSSDICQYIAIVI
ATNEKLRSLEIGSNKIEDAGMQLLCGGLRHPNCMLVNIGLEECMLTSACCRSLASVLT
TNKTLERLNLLQNHLGNDGVAKLLESLISPDCVLKVVGLPLTGLNTQTQQLLMTVKER
KPSLIFLSETWSLKEGREIGVTPASQPGSIIPNSNLDYMFFKFPRMSAAMRTSNTASR
QPL"
BASE COUNT 946 a 725 c 781 g 976 t
ORIGIN
1 gccaaggaga cctggtggca gggttgatct catatttctt gtgcctcaaa atcccttctc
61 tgaagtctgc cttccctgga gaagcaagat ggcagaatcg gattctactg actttgacct
121 gctgtggtat ctagagaatc tcagtgacaa ggaatttcag agttttaaga agtatctggc
181 acgcaagatt cttgatttca aactgccaca gtttccactg atacagatga caaaagaaga
241 actggctaac gtgttgccaa tctcttatga gggacagtat atatggaata tgctcttcag
301 catattttca atgatgcgta aggaagatct ttgtaggaag atcattggca gacgaaaccg
361 caatcaggag gcatgcaaag ctgtcatgag gagaaaattc atgctgcaat gggaaagtca
421 cacttttgga aaatttcatt ataaattttt tcgtgacgtt tcgtcagatg tgttctacat
481 acttcaatta gcctatgatt ctaccagcta ttattcagca aacaatctca atgtgttcct
541 gatgggagag agagcatctg gaaaaactat tgttataaat ctggctgtgt tgaggtggat
601 caagggtgag atgtggcaga acatgatctc gtacgtcgtt cacctcactt ctcacgaaat
661 aaaccagatg accaacagca gcttggctga gctaatcgcc aaggactggc ctgacggcca
721 ggctcccatt gcagacatcc tgtctgatcc caagaaactc cttttcatcc tcgaggactt
781 ggacaacata agattcgagt taaatgtcaa tgaaagtgct ttgtgtagta acagcaccca
841 gaaagttccc attccagttc tcctggtcag tttgctgaag agaaaaatgg ctccaggctg
901 ctggttcctc atctcctcaa ggcccacacg tgggaataat gtaaaaacgt tcttgaaaga
961 ggtagattgc tgcacgacct tgcagctgtc gaatgggaag agggagatat attttaactc
1021 tttctttaaa gaccgccaga gggcgtcggc agccctccag cttgtacatg aggatgaaat
1081 actcgtgggt ctgtgccgag tcgccatctt atgctggatc acgtgtactg tcctgaagcg
1141 gcagatggac aaggggcgtg acttccagct ctgctgccaa acacccactg atctacatgc
1201 ccactttctt gctgatgcgt tgacatcaga ggctggactt actgccaatc agtatcacct
1261 aggtctccta aaacgtctgt gtttgctggc tgcaggagga ctgtttctga gcaccctgaa
1321 tttcagtggt gaagacctca gatgtgttgg gtttactgag gctgatgtct ctgtgttgca
1381 ggccgcgaat attcttttgc cgagcaacac tcataaagac cgttacaagt tcatacactt
1441 gaacgtccag gagttttgta cagccattgc atttctgatg gcagtaccca actatctgat
1501 cccctcaggc agcagagagt ataaagagaa gagagaacaa tactctgact ttaatcaagt
1561 gtttactttc atttttggtc ttctaaatgc aaacaggaga aagattcttg agacatcctt
1621 tggataccag ctaccgatgg tagacagctt caagtggtac tcggtgggat acatgaaaca
1681 tttggaccgt gacccggaaa agttgacgca ccatatgcct ttgttttact gtctctatga
1741 gaatcgggaa gaagaatttg tgaagacgat tgtggatgct ctcatggagg ttacagttta
1801 ccttcaatca gacaaggata tgatggtctc attatactgt ctggattact gctgtcacct
1861 gaggacactt aagttgagcg ttcagcgcat ctttcaaaac aaagagccac ttataaggcc
1921 aactgctagt caaatgaaga gccttgtcta ctggagagag atctgctctc ttttttatac
1981 aatggagagc ctccgggagc tgcatatctt tgacaatgac cttaatggta tttcagaaag
2041 gattctgtct aaagccctgg agcattctag ctgtaaactt cgcacactca agttgtccta
2101 tgtctcgact gcttctggtt ttgaagactt actcaaggct ttggctcgta atcggagcct
2161 gacatacctg agtatcaact gtacgtccat ttccctaaat atgttttcac ttctgcatga
2221 catcctgcac gagcccacat gccaaataag tcatctgagc ttgatgaaat gtgatttgcg
2281 agccagcgaa tgcgaagaaa tcgcctctct cctcatcagt ggcgggagtc tgagaaaact
2341 gaccttatcc agcaatccgc tgaggagcga cgggatgaac atactgtgtg atgccttgct
2401 tcatcccaac tgcactctta tatcactggt gttagtcttc tgctgtctca ctgaaaattg
2461 ctgcagcgcc cttggaagag tgcttctgtt cagcccaact ctaagacaac tagacctgtg
2521 tgtgaatcgc ttaaaaaatt acggagtgtt gcatgtgacg tttcccttgc tgtttccaac
2581 ctgtcagtta gaggagcttc atctgtctgg ctgtttcttt agcagcgata tctgtcaata
2641 tattgccata gttattgcta ctaatgaaaa actgaggagc ctggagattg ggagcaacaa
2701 aatagaagat gcaggaatgc agctgctatg tggtggtttg agacatccca actgcatgtt
2761 ggtgaatatt gggctagaag agtgcatgtt aaccagtgcc tgctgtcgat ctcttgcctc
2821 tgttcttacc accaacaaaa cactagaaag actcaacttg cttcaaaatc acttgggcaa
2881 tgatggagtt gcaaaacttc ttgagagctt gatcagccca gattgtgtac ttaaggtagt
2941 tgggcttcca ttaactggcc tgaacacaca aacccagcag ttgctgatga ctgtaaagga
3001 aagaaaaccc agtttgatct ttctgtctga aacttggtct ttaaaggaag gcagagaaat
3061 tggtgtgaca cctgcttctc agccaggttc aataatacct aattctaatt tggattacat
3121 gtttttcaaa tttcccagaa tgtctgcagc catgagaacg tcaaatacag catctaggca
3181 acccctttga tcatgttgta cgtaaacagt atttattata aattactacc gtgactggga
3241 tgcaagagaa ttaggactat aattttccta tttgatgtgt gtgtgtgtgt gtgtgtgtgt
3301 gtgtgtgtgt gtgtgtgtgt gtgaccttga tccagtcaac cacttcaaat tcctacactg
3361 tctcaagagt attaaaagga ttatatgaag taataaagga taaaatgcat tggaaaaaaa
3421 aaaaaaaa
//