LOCUS BC034729 1304 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens lymphotoxin alpha (TNF superfamily, member 1), mRNA (cDNA clone MGC:17018 IMAGE:4341621), complete cds. ACCESSION BC034729 VERSION BC034729.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1304) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1304) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (24-JUL-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Lou Staudt cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 26 Row: j Column: 13 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 6806892. FEATURES Location/Qualifiers source 1..1304 /db_xref="H-InvDB:HIT000051218_04" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:17018 IMAGE:4341621" /tissue_type="Lymph, lymphoma" /clone_lib="NIH_MGC_85" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1304 /gene="LTA" /gene_synonym="LT" /gene_synonym="TNFSF1" /db_xref="GeneID:4049" /db_xref="HGNC:HGNC:6709" /db_xref="MIM:153440" CDS 7..624 /gene="LTA" /gene_synonym="LT" /gene_synonym="TNFSF1" /codon_start=1 /product="lymphotoxin alpha (TNF superfamily, member 1)" /protein_id="AAH34729.1" /db_xref="GeneID:4049" /db_xref="HGNC:HGNC:6709" /db_xref="MIM:153440" /translation="MTPPERLFLPRVRGTTLHLLLLGLLLVLLPGAQGLPGVGLTPSA AQTARQHPKMHLAHSTLKPAAHLIGDPSKQNSLLWRANTDRAFLQDGFSLSNNSLLVP TSGIYFVYSQVVFSGKAYSPKATSSPLYLAHEVQLFSSQYPFHVPLLSSQKMVYPGLQ EPWLHSMYHGAAFQLTQGDQLSTHTDGIPHLVLSPSTVFFGAFAL" BASE COUNT 354 a 395 c 296 g 259 t ORIGIN 1 ctccccatga caccacctga acgtctcttc ctcccaaggg tgcgtggcac caccctacac 61 ctcctccttc tggggctgct gctggttctg ctgcctgggg cccaggggct ccctggtgtt 121 ggcctcacac cttcagctgc ccagactgcc cgtcagcacc ccaagatgca tcttgcccac 181 agcaccctca aacctgctgc tcacctcatt ggagacccca gcaagcagaa ctcactgctc 241 tggagagcaa acacggaccg tgccttcctc caggatggtt tctccttgag caacaattct 301 ctcctggtcc ccaccagtgg catctacttc gtctactccc aggtggtctt ctctgggaaa 361 gcctactctc ccaaggccac ctcctcccca ctctacctgg cccatgaggt ccagctcttc 421 tcctcccagt accccttcca tgtgcctctc ctcagctccc agaagatggt gtatccaggg 481 ctgcaggaac cctggctgca ctcgatgtac cacggggctg cgttccagct cacccaggga 541 gaccagctat ccacccacac agatggcatc ccccacctag tcctcagccc tagtactgtc 601 ttctttggag ccttcgctct gtagaacttg gaaaaatcca gaaagaaaaa ataattgatt 661 tcaagacctt ctccccattc tgcctccatt ctgaccattt caggggtcgt caccacctct 721 cctttggcca ttccaacagc tcaagtcttc cctgatcaag tcaccggagc tttcaaagaa 781 ggaattctag gcatcccagg ggaccacacc tccctgaacc atccctgatg tctgtctggc 841 tgaggatttc aagcctgcct aggaattccc agcccaaagc tgttggtctg tcccaccagc 901 taggtggggc ctagatccac acacagagga agagcaggca catggaggag cttgggggat 961 gactagaggc agggagggga ctatttatga aggcaaaaaa attaaattat ttatttatgg 1021 aggatggaga gaggggaata atagaagaac atccaaggag aaacagagac aggcccaaga 1081 gatgaagagt gagagggcat gcgcacaagg ctgaccaaga gagaaagaag taggcatgag 1141 ggatcacagg gccccagaag gcagggaaag gctctgaaag ccagctgccg accagagccc 1201 cacacggagg catctgcacc ctcgatgaag cccaataaac ctcttttctc tgaaaaaaaa 1261 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa //