LOCUS       BC034581                2043 bp    mRNA    linear   HUM 06-OCT-2005
DEFINITION  Homo sapiens PRP38 pre-mRNA processing factor 38 (yeast) domain
            containing B, mRNA (cDNA clone IMAGE:4819384), complete cds.
ACCESSION   BC034581
VERSION     BC034581.1
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 2043)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2002) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
            cDNA Library Preparation: Michael J. Brownstein (NHGRI) &  Shiraki
            Toshiyuki and Piero Carninci (RIKEN)
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Baylor College of Medicine Human Genome
            Sequencing Center
            Center code: BCM-HGSC
            Web site: http://www.hgsc.bcm.tmc.edu/cdna/
            Contact: amg@bcm.tmc.edu
            Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
            Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
            A.N., Gibbs, R.A.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 71 Row: b Column: 22
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 8922357
            This clone has the following problem: The cds is short compared to
            the longest cds in the locus.
FEATURES             Location/Qualifiers
     source          1..2043
                     /db_xref="H-InvDB:HIT000093484"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="IMAGE:4819384"
                     /tissue_type="Brain, hippocampus"
                     /clone_lib="NIH_MGC_95"
                     /lab_host="DH10B"
                     /note="Vector: pBluescriptR"
     gene            1..2043
                     /gene="PRPF38B"
                     /gene_synonym="FLJ10330"
                     /gene_synonym="RP11-293A10.1"
                     /db_xref="GeneID:55119"
                     /db_xref="HGNC:HGNC:25512"
                     /db_xref="IMGT/GENE-DB:25512"
                     /db_xref="MIM:25512"
     CDS             266..547
                     /gene="PRPF38B"
                     /gene_synonym="FLJ10330"
                     /gene_synonym="RP11-293A10.1"
                     /codon_start=1
                     /product="PRPF38B protein"
                     /protein_id="AAH34581.1"
                     /db_xref="GeneID:55119"
                     /db_xref="HGNC:HGNC:25512"
                     /db_xref="IMGT/GENE-DB:25512"
                     /db_xref="MIM:25512"
                     /translation="MANNSPALTGNSQPQHQAAAAAAQQQQQCGGGGATKPAVSGKQG
                     NVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKD"
BASE COUNT          541 a          440 c          463 g          599 t
ORIGIN      
        1 agtgggcgga agagatcgag ctccctggct gccggctcgc cttctgcgtg gagttctcgc
       61 ggtctgggtt tcgctgtctg ctcttggccc ggggtcattt tgtcggcgtc gggtgccctc
      121 tcttgcccag ctggggcaca gcgaggcggc cccttctccc gacgacgttc gatggagtag
      181 ggtcccagac cgttgtcccg aagagcgaga tcgagcttgg ccccctcccc cccctccttc
      241 cctccctcct tccttccgcc gcaacatggc taacaacagc cccgcgctga caggcaactc
      301 gcagccgcag caccaggcgg ctgcagctgc ggctcagcaa cagcagcagt gcggcggcgg
      361 cggcgctacc aagccggcgg tctccggcaa gcagggcaat gtgctcccgc tctggggcaa
      421 cgagaagacc atgaacctca accccatgat cctgaccaac atcctgtcgt cgccttactt
      481 caaagtacag ctctacgagc tcaagaccta ccacgaggtg gtggacgaga tctactttaa
      541 ggattgactc agtcttgcag cgaggcttgg agcagcccag ggtcgcaggt agaggtcacg
      601 cacgttgaac catgggagaa aggaagcagg aaaacagcgg gccagacagg gatgtgcgga
      661 ggggttcgag gtgttggaac aggaggaatt gtttctacag cattttgcct gttatacaaa
      721 ttatttaccc tgaagttaac tcgaaagcaa gtgatgggtc ttataacaca cacagactct
      781 ccatatatta gagcgcttgg atttatgtat ataagatata cacagccccc tacagatctg
      841 tgggactggt ttgaatcctt ccttgatgat gaagaggtat gtcaacaagg gtaataattt
      901 gttttcttct gattactctc atatttttat tatcttttat ttattggtgg tttaatgtct
      961 tcaagaactt cctgtagtta aatttatttc agtgagatac ttttggaatt aatgtccttt
     1021 tactgagacc tgatggcttt tatgtatttt agggtaaatt tctgaagttt tattttcttg
     1081 ctttaaaatt gtttaaatgt gtttggtaac tattggaaaa ttttctcttc ttaattatgt
     1141 tctgtgtatt gtattgatcc tgaattgtat agttaatagt gacttttcaa gatggggcat
     1201 gctcaagatc gaacagataa taaaagatat gcacatagaa tactaattgt agcttttttt
     1261 tcttctggaa catttcagtt cttcaccctc tagcttcttc caaatatcag tattcccact
     1321 tgcatagaag tgcagaattg aagagttggg tgttacataa ataggctaag tgtttggatg
     1381 acttgttcaa ggtgacaaaa ttttaattcc agttttctga ctcctagtac accacacaca
     1441 cctttaaaaa agaaattttt taaattgtaa ttcgagtctc cctaatttga aatctgaaat
     1501 actaagttag atttaaatcg tgtatgcatt ggctgggcgt ggtggctcac attgtaatcc
     1561 caacacttcg agagttcaag accagcctga gcaatatagt gagacctcat ctctacaaaa
     1621 aaaagtttaa aaattagctg agctagaggt atgcatctta gtcccaccta cttgggaggc
     1681 tggggtggga ggatcacttg agcccaggag acagaatttg ctgtgagcca agatcattgc
     1741 cactgcattc cagcctgggt aacacagtaa gaccctttct caaaacaaaa caaaatatca
     1801 tatatgcatt aatttacttg catggtgaag tccaacatgt caaaaatgaa atgatgagct
     1861 gtattgtccc tatgtctacc cagtctacta ctttgtgttt taaggttcat aagacttttt
     1921 gagtgctatg tgtcagtagt ctatttacag agttcatcca aagaatttat tgaattaagg
     1981 gatggttcta atggaaatct attgtgtttt gttattacat gcacaccgaa aaaaaaaaaa
     2041 aaa
//