LOCUS BC034581 2043 bp mRNA linear HUM 06-OCT-2005 DEFINITION Homo sapiens PRP38 pre-mRNA processing factor 38 (yeast) domain containing B, mRNA (cDNA clone IMAGE:4819384), complete cds. ACCESSION BC034581 VERSION BC034581.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2043) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2043) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (24-JUL-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 71 Row: b Column: 22 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 8922357 This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..2043 /db_xref="H-InvDB:HIT000093484" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4819384" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..2043 /gene="PRPF38B" /gene_synonym="FLJ10330" /gene_synonym="RP11-293A10.1" /db_xref="GeneID:55119" /db_xref="HGNC:HGNC:25512" /db_xref="IMGT/GENE-DB:25512" /db_xref="MIM:25512" CDS 266..547 /gene="PRPF38B" /gene_synonym="FLJ10330" /gene_synonym="RP11-293A10.1" /codon_start=1 /product="PRPF38B protein" /protein_id="AAH34581.1" /db_xref="GeneID:55119" /db_xref="HGNC:HGNC:25512" /db_xref="IMGT/GENE-DB:25512" /db_xref="MIM:25512" /translation="MANNSPALTGNSQPQHQAAAAAAQQQQQCGGGGATKPAVSGKQG NVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKD" BASE COUNT 541 a 440 c 463 g 599 t ORIGIN 1 agtgggcgga agagatcgag ctccctggct gccggctcgc cttctgcgtg gagttctcgc 61 ggtctgggtt tcgctgtctg ctcttggccc ggggtcattt tgtcggcgtc gggtgccctc 121 tcttgcccag ctggggcaca gcgaggcggc cccttctccc gacgacgttc gatggagtag 181 ggtcccagac cgttgtcccg aagagcgaga tcgagcttgg ccccctcccc cccctccttc 241 cctccctcct tccttccgcc gcaacatggc taacaacagc cccgcgctga caggcaactc 301 gcagccgcag caccaggcgg ctgcagctgc ggctcagcaa cagcagcagt gcggcggcgg 361 cggcgctacc aagccggcgg tctccggcaa gcagggcaat gtgctcccgc tctggggcaa 421 cgagaagacc atgaacctca accccatgat cctgaccaac atcctgtcgt cgccttactt 481 caaagtacag ctctacgagc tcaagaccta ccacgaggtg gtggacgaga tctactttaa 541 ggattgactc agtcttgcag cgaggcttgg agcagcccag ggtcgcaggt agaggtcacg 601 cacgttgaac catgggagaa aggaagcagg aaaacagcgg gccagacagg gatgtgcgga 661 ggggttcgag gtgttggaac aggaggaatt gtttctacag cattttgcct gttatacaaa 721 ttatttaccc tgaagttaac tcgaaagcaa gtgatgggtc ttataacaca cacagactct 781 ccatatatta gagcgcttgg atttatgtat ataagatata cacagccccc tacagatctg 841 tgggactggt ttgaatcctt ccttgatgat gaagaggtat gtcaacaagg gtaataattt 901 gttttcttct gattactctc atatttttat tatcttttat ttattggtgg tttaatgtct 961 tcaagaactt cctgtagtta aatttatttc agtgagatac ttttggaatt aatgtccttt 1021 tactgagacc tgatggcttt tatgtatttt agggtaaatt tctgaagttt tattttcttg 1081 ctttaaaatt gtttaaatgt gtttggtaac tattggaaaa ttttctcttc ttaattatgt 1141 tctgtgtatt gtattgatcc tgaattgtat agttaatagt gacttttcaa gatggggcat 1201 gctcaagatc gaacagataa taaaagatat gcacatagaa tactaattgt agcttttttt 1261 tcttctggaa catttcagtt cttcaccctc tagcttcttc caaatatcag tattcccact 1321 tgcatagaag tgcagaattg aagagttggg tgttacataa ataggctaag tgtttggatg 1381 acttgttcaa ggtgacaaaa ttttaattcc agttttctga ctcctagtac accacacaca 1441 cctttaaaaa agaaattttt taaattgtaa ttcgagtctc cctaatttga aatctgaaat 1501 actaagttag atttaaatcg tgtatgcatt ggctgggcgt ggtggctcac attgtaatcc 1561 caacacttcg agagttcaag accagcctga gcaatatagt gagacctcat ctctacaaaa 1621 aaaagtttaa aaattagctg agctagaggt atgcatctta gtcccaccta cttgggaggc 1681 tggggtggga ggatcacttg agcccaggag acagaatttg ctgtgagcca agatcattgc 1741 cactgcattc cagcctgggt aacacagtaa gaccctttct caaaacaaaa caaaatatca 1801 tatatgcatt aatttacttg catggtgaag tccaacatgt caaaaatgaa atgatgagct 1861 gtattgtccc tatgtctacc cagtctacta ctttgtgttt taaggttcat aagacttttt 1921 gagtgctatg tgtcagtagt ctatttacag agttcatcca aagaatttat tgaattaagg 1981 gatggttcta atggaaatct attgtgtttt gttattacat gcacaccgaa aaaaaaaaaa 2041 aaa //