LOCUS BC034530 3803 bp mRNA linear HUM 07-AUG-2008 DEFINITION Homo sapiens FYVE, RhoGEF and PH domain containing 1, mRNA (cDNA clone MGC:24891 IMAGE:4938457), complete cds. ACCESSION BC034530 VERSION BC034530.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3803) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3803) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (24-JUL-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: David N. Louis, M.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 29 Row: o Column: 13 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 24797152. FEATURES Location/Qualifiers source 1..3803 /db_xref="H-InvDB:HIT000051179" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:24891 IMAGE:4938457" /tissue_type="Brain, anaplastic oligodendroglioma with 1p/19q loss" /clone_lib="NCI_CGAP_Brn67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3803 /gene="FGD1" /gene_synonym="AAS" /gene_synonym="ZFYVE3" /db_xref="GeneID:2245" /db_xref="HGNC:HGNC:3663" /db_xref="MIM:300546" CDS 247..3132 /gene="FGD1" /gene_synonym="AAS" /gene_synonym="ZFYVE3" /codon_start=1 /product="FYVE, RhoGEF and PH domain containing 1" /protein_id="AAH34530.1" /db_xref="GeneID:2245" /db_xref="HGNC:HGNC:3663" /db_xref="MIM:300546" /translation="MHGHRAPGGAGPSEPEHPATNPPGAAPPACADSDPGASEPGLLA RRGSGSALGGPLDPQFVGPSDTSLGAAPGHRVLPCGPSPQHHRALRFSYHLEGSQPRP GLHQGNRILVKSLSLDPGQSLEPHPEGPQRLRSDPGPPTETPSQRPSPLKRAPGPKPQ VPPKPSYLQMPRMPPPLEPIPPPPSRPLPADPRVAKGLAPRAEASPSSAAVSSLIEKF EREPVIVASDRPVPGPSPGPPEPVMLPQPTSQPPVPQLPEGEASRCLFLLAPGPRDGE KVPNRDSGIDSISSPSNSEETCFVSDDGPPSHSLCPGPPALASVPVALADPHRPGSQE VDSDLEEEDDEEEEEEKDREIPVPLMERQESVELTVQQKVFHIANELLQTEKAYVSRL HLLDQVFCARLLEEARNRSSFPADVVHGIFSNICSIYCFHQQFLLPELEKRMEEWDRY PRIGDILQKLAPFLKMYGEYVKNFDRAVELVNTWTERSTQFKVIIHEVQKEEACGNLT LQHHMLEPVQRIPRYELLLKDYLLKLPHGSPDSKDAQKSLELIATAAEHSNAAIRKME RMHKLLKVYELLGGEEDIVSPTKELIKEGHILKLSAKNGTTQDRYLILFNDRLLYCVP RLRLLGQKFSVRARIDVDGMELKESSNLNLPRTFLVSGKQRSLELQARTEEEKKDWVQ AINSTLLKHEQTLETFKLLNSTNREDEDTPPNSPNVDLGKRAPTPIREKEVTMCMRCQ EPFNSITKRRHHCKACGHVVCGKCSEFRARLVYDNNRSNRVCTDCYVALHGVPGSSPA CSQHTPQRRRSILEKQASVAAENSVICSFLHYMEKGGKGWHKAWFVVPENEPLVLYIY GAPQDVKAQRSLPLIGFEVGPPEAGERPDRRHVFKITQSHLSWYFSPETEELQRRWMA VLGRAGRGDTFCPGPTLSEDREMEEAPVAALGATAEPPESPQTRDKT" BASE COUNT 805 a 1231 c 1059 g 708 t ORIGIN 1 cggcgatgcc tggcacggca gcggcggtgg ccgcggctgc tgctgctgct actgccaccg 61 ctgccacggc tgctggcccg ggcccgggct gggggcttga gtctctgcag tggggctgag 121 cccgcagtcc cgccccccga tcctgaggcc gctgctccgc cgggcgccgg gcctcctccg 181 cccgcgcctc cgccccagga gctggagcca agcggggagc tcgggccccg cgcccaggcc 241 cggaccatgc atggccaccg agccccgggg ggcgccgggc cttcggagcc cgaacacccg 301 gccacgaacc cgccgggcgc cgctccgccg gcctgtgccg actcggaccc tggagcctcg 361 gaacccggac tgctggcgcg caggggctca ggttcggctc ttggcggccc actggatccc 421 cagtttgtcg gaccctcgga caccagcctg ggcgctgctc caggccaccg ggtcttgccc 481 tgcggtccca gtccacagca ccaccgggcc ctgcgcttct cttaccacct ggagggctcg 541 cagcctcggc ctgggctgca ccagggaaac cggatcctgg ttaaaagttt gtcccttgac 601 cctggccaaa gcctagagcc tcatccagaa ggtccccagc ggcttcgctc agacccaggt 661 cccccgactg aaacccctag ccagcgtcct tcaccactga agcgggcacc gggcccgaag 721 ccacaggtgc ccccaaagcc cagctacctg cagatgcccc ggatgccccc cccactggag 781 cccatccccc ctccaccatc acgcccactg cctgccgacc cccgagtggc caagggcctg 841 gctcccaggg cagaggccag ccccagttct gcagcagtat cctcactgat tgagaagttt 901 gaaagagagc ctgtgattgt cgcctcggat agaccagtcc ctggccccag cccaggtccc 961 ccagagccag tcatgttgcc acagccaacc tcgcagccac cagtgcccca gctccccgag 1021 ggtgaggcct cccgctgcct gtttctgctg gctcctgggc cccgggacgg tgagaaggtg 1081 cccaaccggg acagcggcat tgatagcatc agctcgccat ccaacagcga ggagacctgc 1141 ttcgtcagtg atgacgggcc ccccagccac agcctctgcc ctgggccccc tgccctggct 1201 agtgtgcctg ttgccttggc cgacccccac cggcctggct cccaagaggt tgacagtgac 1261 ctggaggagg aggacgacga ggaggaggag gaagagaagg acagagaaat cccagtgccc 1321 ctgatggaga gacaggagtc tgtggagttg actgtgcagc aaaaggtgtt tcacattgcc 1381 aatgagctcc tgcaaactga gaaggcctac gtttccaggc tccatctcct ggatcaggtg 1441 ttctgtgccc ggctgctgga agaagctcgg aaccgcagtt ccttcccggc cgacgttgtc 1501 cacggcatct tctctaacat ctgctccatc tattgcttcc accagcagtt cctgctgcct 1561 gagctagaga agcgcatgga ggaatgggac cgctatccac gcattggaga catcctgcag 1621 aaactggccc ccttcctcaa gatgtatggt gagtatgtga agaactttga ccgggccgtg 1681 gagctggtca acacctggac agagcgctcc acccagttta aagtcatcat ccatgaggtg 1741 cagaaggagg aagcctgtgg caacctgaca ttgcagcacc acatgctgga gcctgtgcag 1801 cgcatccccc gctatgagct tcttctcaag gactatctgt taaagctgcc ccatggctcc 1861 ccggacagca aggatgccca aaagtctctg gagctgatcg ccacagcagc agagcactcg 1921 aatgctgcca tccgcaaaat ggagcgaatg cataagctgc tgaaggtata tgagctgtta 1981 gggggcgagg aggacattgt cagccccacc aaagagctca taaaagaagg ccacatcctt 2041 aagctgtcag caaagaatgg gaccactcaa gaccgatacc tcatactatt caacgaccgc 2101 ctcctttact gcgtgcccag gctgcggctc cttggccaga agtttagcgt gcgggcacgc 2161 attgatgtag atggcatgga gctaaaggag agctccaacc tcaatctgcc tcgaaccttc 2221 ctggtgtcag gaaagcagcg ctccctcgag ctccaggcca ggactgagga ggagaagaaa 2281 gactgggtcc aggccatcaa ctccaccctc ctgaagcatg aacagacgct ggagactttc 2341 aaactgttga actcaacaaa cagggaagat gaagacaccc cacccaactc tccaaacgtg 2401 gatcttggga agcgggcacc tacgcccatc cgggaaaagg aagtcaccat gtgcatgcgc 2461 tgccaggagc ccttcaattc tatcaccaaa cgcaggcacc actgcaaggc ctgcgggcat 2521 gtggtttgtg ggaagtgctc cgagttccgg gcccgcctcg tctatgacaa caaccgctcc 2581 aaccgtgtgt gcactgattg ctatgtggcc ttgcacgggg tgcctgggag cagtccagcc 2641 tgcagccagc atacacccca gcgccggagg tccatcctgg agaaacaggc ctcagtggct 2701 gcagagaaca gcgtcatctg cagcttcctg cactacatgg agaagggtgg caaaggatgg 2761 cacaaggcat ggttcgtggt ccctgaaaat gaacccttgg tgctgtatat ctacggagcc 2821 cctcaggatg tgaaagccca gcgcagcctg cccctcattg gcttcgaggt gggaccgccc 2881 gaggcagggg agcggcctga cagaaggcat gtcttcaaga tcacccagag ccacctcagc 2941 tggtacttca gccctgagac agaggaacta cagcgacgct ggatggctgt gcttggccgg 3001 gcgggccgag gggacacgtt ctgcccgggg cccacactgt ctgaggacag ggagatggag 3061 gaggcaccgg tggctgcttt aggagccact gctgaacccc ccgaatcccc ccagacccga 3121 gacaagacct agagggtttg ggacaaactg ggagccccca ccccacactc tagttgccca 3181 tgtctgattg ggggctctag ccccttccct cccagctcag tcaatacttg aactcccatc 3241 acgggcactt tcaatcccga atgctgggtc ttgggttttt taattcatct tttcacaaaa 3301 cgtgggcttt taaaaaatat attcctacag tgatgtcaat ttttattaat ccctgtcccc 3361 agggagggtg ggagccgttg ccagtcctac ctgaattagg tcgtttttct ccctcatccc 3421 tcaataccct accacagatc ctgcctccac ccagttcccc acaaagcacc agaggtagga 3481 gacctggatt caagtgccag ctctgccact gaccctgggg ccccgaccca gccctgcctc 3541 ctcagccagt gtcttcacac gtacaactcc acgtggggtg gcaactagac ctctcctgcc 3601 tctcccatgg cttacagctt ctacccggcc ccaaggctac ccagtatttt atcgtccaga 3661 cccatggcag ggccagcggg caggacaggg aaacaggggg gaggacaatg gatactcagt 3721 tttttgtgtt tttttgtgtg tttttttttt tttaagaaaa atacagttta tttcaggctt 3781 acagtaaaaa aaaaaaaaaa aaa //