LOCUS BC034500 3889 bp mRNA linear HUM 03-NOV-2008 DEFINITION Homo sapiens LAG1 homolog, ceramide synthase 3, mRNA (cDNA clone MGC:26926 IMAGE:4838423), complete cds. ACCESSION BC034500 VERSION BC034500.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3889) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3889) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (11-JUL-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 34 Row: o Column: 3 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 31341477. FEATURES Location/Qualifiers source 1..3889 /db_xref="H-InvDB:HIT000051172" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:26926 IMAGE:4838423" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3889 /gene="LASS3" /gene_synonym="CerS3" /db_xref="GeneID:204219" /db_xref="HGNC:HGNC:23752" CDS 384..1532 /gene="LASS3" /gene_synonym="CerS3" /codon_start=1 /product="LASS3 protein" /protein_id="AAH34500.1" /db_xref="GeneID:204219" /db_xref="HGNC:HGNC:23752" /translation="MFWTFKEWFWLERFWLPPTIKWSDLEDHDGLVFVKPSHLYVTIP YAFLLLIIRRVFEKFVASPLAKSFGIKETVRKVTPNTVLENFFKHSTRQPLQTDIYGL AKKCNLTERQVERWFRSRRNQERPSRLKKFQEACWRFAFYLITVAGIAFLYDKPWLYD LWEVWNGYPKQPLLPSQYWYYILEMSFYWSLLFRLGFDVKRKDFLAHIIHHLAAISLM SFSWCANYIRSGTLVMIVHDVADIWLESAKMFSYAGWTQTCNTLFFIFSTIFFISRLI VFPFWILYCTLILPMYHLEPFFSYIFLNLQLMILQVLHLYWGYYILKMLNRCIFMKSI QDVRSDDEDYEEEEEEEEEEATKGKEMDCLKNGLGAERHLIPNGQHGH" BASE COUNT 1072 a 860 c 859 g 1098 t ORIGIN 1 agcggggtcc aggacggagg aggaggcagg tggtgaaaca ggaagcaaca tcccatcagg 61 aagaacctga gggtgccatc cagtagcttc gcctcacgtc actgactgcc ctcagtcaga 121 aatcttgact cgcaactttg gagggtgggt ctctgaagga atttcaggtc ttacacagag 181 atgagttgtg ctgctctctg aggagaacga agctggttgg aacgttggaa gctgctctct 241 gactacactt cacaagcaag gggcaccttt tgtggactga catttcagaa agggatgttg 301 tgaaacaaaa gctgacattt atatatatat acatatatac agtatttgag ttcctcagta 361 gaaagctatc atatatactc agaatgtttt ggacgtttaa agaatggttc tggttggaaa 421 gattctggct tcctccaaca ataaagtggt cagatcttga ggatcacgat ggactcgtct 481 ttgtaaaacc ttctcattta tacgtgacaa ttccatatgc ttttctcttg ctgattatca 541 ggcgtgtatt tgaaaaattt gttgcttcac ctctagcaaa atcatttggc attaaagaga 601 cagttcgaaa ggttacacca aatactgtct tagagaattt tttcaaacat tccacaaggc 661 aaccattgca aactgatatt tatggactgg caaagaagtg taacttgacg gagcgccagg 721 tggaaagatg gtttaggagt cggcggaatc aagagaggcc ttccaggctg aagaaattcc 781 aggaagcttg ctggagattt gcattttact tgatcactgt tgctggaatt gcgtttcttt 841 atgataaacc ttggctatat gacttatggg aggtttggaa tggctatccc aaacagcccc 901 tgctgccatc ccagtactgg tactacattt tagaaatgag tttttattgg tctctgttat 961 ttagacttgg ctttgatgtc aagagaaagg attttctagc tcatatcatc caccacctgg 1021 ctgctattag tctgatgagc ttctcttggt gtgctaatta tattcgcagt gggaccctcg 1081 tgatgattgt acacgatgtg gctgacattt ggctggagtc tgctaagatg ttttcttatg 1141 ctggatggac gcagacctgt aacaccctgt ttttcatctt ctccaccata tttttcatca 1201 gccgcctcat tgtttttcct ttctggattt tatattgcac gctgatcttg cctatgtatc 1261 acctcgagcc tttcttttca tacatcttcc tcaacctaca gctcatgatc ttgcaggtcc 1321 ttcaccttta ctggggttat tacatcttga agatgctcaa cagatgtata ttcatgaaga 1381 gcatccagga tgtgaggagt gatgacgagg attatgaaga ggaagaggaa gaggaagaag 1441 aagaggctac caaaggcaaa gagatggatt gtttaaagaa cggcctcggg gctgagaggc 1501 acctcattcc caatggccag catggccatt agctggaagc ctacaggact cccatggcac 1561 agcatgctgc aagtactgtt ggcagcctgg cttccaggcc ccacacagac cccacattct 1621 gcccttccct ctttctcacc accgccttcc ctcccaccta agatgtgttt accaaaatgt 1681 tgttaacttg tgttaaaatg ttaaatataa gcatgcccat ggatttttac tgcagttagg 1741 actcagactg gtcaaagatt tcaaagattt ctccacagaa ccgtctcagt tctaattgca 1801 ctccctcatg catgtcactt tctcaggggc tcgctttgtt atagaccctt tcgcctcgcc 1861 accttgcctg tcctcaggac gctttcacag gtgctaagtg atctcatttt tcccaggtgt 1921 gtttggccac aaagagcagc ttctttctca aaatgagtta gaagtggcag tgggacagga 1981 gcggaaggac cacaccagga gacacttcca tcctgaagct taggtgcctc atctccacag 2041 ggcggtggca gtccctgcct gccaccccac agggttgcag caaggattaa gtgagatcac 2101 agaagtttaa gtacacactg tcaaccgtgg ggtcatcgtg aaccaaccca ctttgcactg 2161 tttgggagac agaaacctgg ctaaacatgg cactgcaatg ggcctgaaca aaaggcagaa 2221 tctttaaaaa ttcctcttaa atgactctgg agatacctgg aaatgaaagt gccaagaaag 2281 gtgttccatt ttatttgcta actatttatg cattagctcc ccaagggtca ttctcagatt 2341 ctcctggaat tcttctccct caggacccat ggttcaagga aggaagctta ggccctgttc 2401 cttcctgtcc tttgctggtc tttccctttt ttcctttcta ggagggaagc ttctgtgctg 2461 ctgccctgag cccttccttc aggccagcac agtacctggg gacctccacg ggggaatggg 2521 atccaggcca ggttgcttgc tgagcctcat cacccaggag gcctgagcct ctggggaggg 2581 cacgcatgta cactgccaga cccaggggag atcttgggaa cagaggatgc tacgtgattt 2641 cctctggctt ccaacccaat cagcctgcat cacagtgaaa cacaacacaa aaggccataa 2701 aaggcatacc cctgagaaat gtttaagggc aggtgctaga gtcagtgcca gctccctggg 2761 aggagggata gggacgggca gatcagtagc cagcttgtcc tcaccctcag gaagggagca 2821 ccggagaaga cttgcacacg tccctgcctc ccttgcggcc ttgtcaccag agggacacat 2881 ctcctgggca caatgtgcag ggctgacctg ggagacttct caggtggctg ctggctgagg 2941 agaggccagg ccttcccaag gaagaccctg agtaaaatct gcatctgtcc tcaccacctg 3001 gcacagtctc tcataacggt cagattttgt atgttcatcc tatttattca ggggctcgta 3061 ctagaaagcc acaggagagg tcggcttgta gggactggaa aatcagcccc aagcagagca 3121 gctgcagggc ccctggagcc ggaaggacac tgcacagaac agactgcgtt attgttattt 3181 ttaaataaaa atatacattt gaaaccttaa ggctaaacaa aaataaacaa aaaatccttt 3241 agaattcttt ccacaacaat atctctttct gagaaattgt tacaaacaag gtcagatttt 3301 ctctgtataa catttgcttt tatgaggaca atatcatatg cattatatgc ataatatgat 3361 attataaatc aaaatgcctg cacccacttt agggtatagc tattgactta ttattaatat 3421 tatattatta ttattttgct ggaagaaggt cacactaaga tataattttt tatgttttca 3481 gttaacggta tgttttcttc tttgcttatt tggtttttgt ctctgtacca aatatcttct 3541 tgcttaaggt agaaaagtat ttgtttacct ctatctccag ttttttttct tatttgaatg 3601 ttgaaggtaa aattgatata ccaattttaa ctatttctga tacagctgaa agcactaaac 3661 tacttcataa gaagtagata ctcatttttg taacactatt tagggctttt gtggttaatt 3721 ttaaaggaaa ccactctttc tacaggaaac aagggctcag gattcttcag atgaccttat 3781 aaaaatgcag tccacagtgc tatcaatatt gtaacagtaa tgactacaat aaagccaaaa 3841 gtccagtgta aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa //