LOCUS BC034476 1156 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens frequently rearranged in advanced T-cell lymphomas,
mRNA (cDNA clone MGC:26295 IMAGE:4823463), complete cds.
ACCESSION BC034476
VERSION BC034476.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1156)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1156)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: g Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31317233.
FEATURES Location/Qualifiers
source 1..1156
/db_xref="H-InvDB:HIT000051158"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26295 IMAGE:4823463"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1156
/gene="FRAT1"
/db_xref="GeneID:10023"
/db_xref="HGNC:HGNC:3944"
/db_xref="MIM:602503"
CDS 169..1008
/gene="FRAT1"
/codon_start=1
/product="frequently rearranged in advanced T-cell
lymphomas"
/protein_id="AAH34476.1"
/db_xref="GeneID:10023"
/db_xref="HGNC:HGNC:3944"
/db_xref="MIM:602503"
/translation="MPCRREEEEEAGEEAEGEEEEEDSFLLLQQSVALGSSGEVDRLV
AQIGETLQLDAAQHSPASPCGPPGAPLRAPGPLAAAVPADKARSPAVPLLLPPALAET
VGPAPPGVLRCALGDRGRVRGRAAPYCVAELATGPSALSPLPPQADLDGPPGAGKQGI
PQPLSGPCRRGWLRGAAAPRRLQQRRGSQPETRTGDDDPHRLLQQLVLSGNLIKEAVR
RLHSRRLQLRAKLPQRPLLGPLSAPVHEPPSPRSPRAACSDPGASGRAQLRTGDGVLV
PGS"
BASE COUNT 175 a 416 c 419 g 146 t
ORIGIN
1 agcgggcgcg gctagagtgc ctggcgggct ccggcttccg cgtccgcccc ggccccggtc
61 cagacttagt cttcagctcc gcgcccgctc cgccgcggcc caccgcgccc gccggcagcc
121 gagcccccag cgacgcccgc acagctccgg gtgcccagac agggggccat gccgtgccgg
181 agggaggagg aagaggaagc cggcgaggag gcggaggggg aggaagagga ggaggacagc
241 ttcctcctac tgcagcagtc agtggcgctg ggcagctcgg gcgaggtgga ccggctggtg
301 gcccagatcg gcgagacgct gcagctggac gcggcgcagc acagcccggc ctcgccgtgc
361 gggcccccgg gggcgccgct gcgggccccg gggcccctgg ctgcggcggt gccggcggac
421 aaggccaggt ccccggcggt gccgctgctg ctgccgcccg cgttggcgga gactgtgggc
481 ccggcgccgc ctggggtcct gcgctgcgcc ctgggggacc gcggccgcgt gcggggccgc
541 gctgcgccct actgcgtggc cgagctcgcc acaggcccca gcgcgctgtc cccactgccc
601 cctcaggccg accttgatgg gcctccggga gctggcaagc agggcatccc gcagccgctg
661 tcgggtccgt gccggcgagg atggctccgg ggcgccgccg ccccccgccg cctgcagcag
721 cgacgcgggt cccaaccaga aacccgcaca ggcgacgacg acccgcaccg gcttctgcag
781 cagctagtgc tctctggaaa cctcatcaag gaggccgtgc gaaggcttca ttcgcgacgg
841 ctgcagttac gtgcaaagct tccccaacgc ccgctcctgg gacctctgtc ggccccggtg
901 catgaacccc cttcgcctcg cagccctcgc gcggcctgca gtgaccctgg cgcctccggg
961 agggcgcagc tcagaactgg cgacggcgtt cttgtgcctg gcagctaaca cgcccggggt
1021 ggccacagcg ccagcctcag actggagggc aaggggttcc cttgagggct gcagttctac
1081 tcaggctggt ggagaactct ggcttttgga agcgagagta aaaagctaat gacgaggaac
1141 caaaaaaaaa aaaaaa
//